Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7088 ATGGATTATTCACCATGGATTAACACTTCCTTGGATCTCAATATTAACCCTCAAAGGCCTCATCTAGAAGCTCCTATAAATGGAAGGGAAAACAATTTTTTCTCATTAGGGATGAGGAGCTCTTCTCCAAAAGAAGAGTCAAGTGGTGCTTTGGTGGAGGAGCTGAAACGAGTGAGTGCTGAAAACAAGAAGTTAACAGGAATGTTGACAGAGATGTGTGAGAATTACAACACATTAAGAAACAACTTGATGGAATATATGAAGAAAAATCCTGAAACTAAAGAGGTTATAAGTTCATCAAAGAAAAGAAAATCTGATGAAATAAGCACTAGTAACAACAATCTAATAGGAGTTAATGGAAACAACTCTGAGAGTAGTTCAAGTGATGAAGATCAATCATGCAAGAAACCGAGAGAATTAGAAACTTGCATTAAGGCTAAAGTTTCCAGAGTTTATTTCAAAACAGAAGCTTCTGATTCAAGCCTTATCGTGAAAGATGGATATCAATGGAGAAAATACGGACAAAAGGTGACAAGAGATAACCCTTCACCAAGAGCCTATTTCAAATGTTCATTTGCTCCGAGCTGCGCAGTGAAGAAGAAAGTGCAAAGAAGTGTGGATGATCCATCGGTTACAGTTGCAACATATGAAGGAGAACACAATCATCCTCATCCTTCTCAGATGGAGCCAACAAACAACCGTTGTAGGAATCAGATGAATTCAGTAGCACCTTCTTCTGCTGCTGCACCAAGTACAGTTACACTTGATTGGACAAAAAAGACAAAGTGTAGCAATGATTCTTCGTATAAGAATAGGATGATAAATAGTGATTCCAAAATGGAAATACCTCAGATTTTGGTGGAACAAATGGCTTCTTCGTTGACCAAGGATGTTAAGTTTAGAGCAGCACTTGCAGCTGCTATATCGGGACAAATGTTGCACCAGAATTAA 951 0.3807 MDYSPWINTSLDLNINPQRPHLEAPINGRENNFFSLGMRSSSPKEESSGALVEELKRVSAENKKLTGMLTEMCENYNTLRNNLMEYMKKNPETKEVISSSKKRKSDEISTSNNNLIGVNGNNSESSSSDEDQSCKKPRELETCIKAKVSRVYFKTEASDSSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCAVKKKVQRSVDDPSVTVATYEGEHNHPHPSQMEPTNNRCRNQMNSVAPSSAAAPSTVTLDWTKKTKCSNDSSYKNRMINSDSKMEIPQILVEQMASSLTKDVKFRAALAAAISGQMLHQN* 317
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7088 316 Coils Coil 69 89 - -
Psa5g7088 316 MobiDBLite consensus disorder prediction 109 128 - -
Psa5g7088 316 SUPERFAMILY WRKY DNA-binding domain 162 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g7088 316 Pfam WRKY DNA -binding domain 165 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g7088 316 MobiDBLite consensus disorder prediction 91 136 - -
Psa5g7088 316 SMART WRKY_cls 164 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g7088 316 PANTHER TRANSCRIPTION FACTOR 1 316 - -
Psa5g7088 316 MobiDBLite consensus disorder prediction 91 108 - -
Psa5g7088 316 ProSiteProfiles WRKY domain profile. 159 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g7088 316 Gene3D WRKY domain 132 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g7088 316 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 316 IPR044810 GO:0003700
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa5g7088 Psa-Chr5 578704614 578706779 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g7088 4 316 WRKY Transcription Factor Family AT1G80840 52.615 1.10e-95 283
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g7088 WRKY 2.5e-23 CL0274
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7088 - - gmx:100798375 380.563