Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g7088 | ATGGATTATTCACCATGGATTAACACTTCCTTGGATCTCAATATTAACCCTCAAAGGCCTCATCTAGAAGCTCCTATAAATGGAAGGGAAAACAATTTTTTCTCATTAGGGATGAGGAGCTCTTCTCCAAAAGAAGAGTCAAGTGGTGCTTTGGTGGAGGAGCTGAAACGAGTGAGTGCTGAAAACAAGAAGTTAACAGGAATGTTGACAGAGATGTGTGAGAATTACAACACATTAAGAAACAACTTGATGGAATATATGAAGAAAAATCCTGAAACTAAAGAGGTTATAAGTTCATCAAAGAAAAGAAAATCTGATGAAATAAGCACTAGTAACAACAATCTAATAGGAGTTAATGGAAACAACTCTGAGAGTAGTTCAAGTGATGAAGATCAATCATGCAAGAAACCGAGAGAATTAGAAACTTGCATTAAGGCTAAAGTTTCCAGAGTTTATTTCAAAACAGAAGCTTCTGATTCAAGCCTTATCGTGAAAGATGGATATCAATGGAGAAAATACGGACAAAAGGTGACAAGAGATAACCCTTCACCAAGAGCCTATTTCAAATGTTCATTTGCTCCGAGCTGCGCAGTGAAGAAGAAAGTGCAAAGAAGTGTGGATGATCCATCGGTTACAGTTGCAACATATGAAGGAGAACACAATCATCCTCATCCTTCTCAGATGGAGCCAACAAACAACCGTTGTAGGAATCAGATGAATTCAGTAGCACCTTCTTCTGCTGCTGCACCAAGTACAGTTACACTTGATTGGACAAAAAAGACAAAGTGTAGCAATGATTCTTCGTATAAGAATAGGATGATAAATAGTGATTCCAAAATGGAAATACCTCAGATTTTGGTGGAACAAATGGCTTCTTCGTTGACCAAGGATGTTAAGTTTAGAGCAGCACTTGCAGCTGCTATATCGGGACAAATGTTGCACCAGAATTAA | 951 | 0.3807 | MDYSPWINTSLDLNINPQRPHLEAPINGRENNFFSLGMRSSSPKEESSGALVEELKRVSAENKKLTGMLTEMCENYNTLRNNLMEYMKKNPETKEVISSSKKRKSDEISTSNNNLIGVNGNNSESSSSDEDQSCKKPRELETCIKAKVSRVYFKTEASDSSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCAVKKKVQRSVDDPSVTVATYEGEHNHPHPSQMEPTNNRCRNQMNSVAPSSAAAPSTVTLDWTKKTKCSNDSSYKNRMINSDSKMEIPQILVEQMASSLTKDVKFRAALAAAISGQMLHQN* | 317 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g7088 | 316 | Coils | Coil | 69 | 89 | - | - | |
Psa5g7088 | 316 | MobiDBLite | consensus disorder prediction | 109 | 128 | - | - | |
Psa5g7088 | 316 | SUPERFAMILY | WRKY DNA-binding domain | 162 | 225 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Psa5g7088 | 316 | Pfam | WRKY DNA -binding domain | 165 | 223 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Psa5g7088 | 316 | MobiDBLite | consensus disorder prediction | 91 | 136 | - | - | |
Psa5g7088 | 316 | SMART | WRKY_cls | 164 | 224 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Psa5g7088 | 316 | PANTHER | TRANSCRIPTION FACTOR | 1 | 316 | - | - | |
Psa5g7088 | 316 | MobiDBLite | consensus disorder prediction | 91 | 108 | - | - | |
Psa5g7088 | 316 | ProSiteProfiles | WRKY domain profile. | 159 | 225 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Psa5g7088 | 316 | Gene3D | WRKY domain | 132 | 226 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Psa5g7088 | 316 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 1 | 316 | IPR044810 | GO:0003700 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa5g7088 | Psa-Chr5 | 578704614 | 578706779 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa5g7088 | 4 | 316 | WRKY Transcription Factor Family | AT1G80840 | 52.615 | 1.10e-95 | 283 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Psa5g7088 | WRKY | 2.5e-23 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g7088 | - | - | gmx:100798375 | 380.563 |