Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7084 ATGCTTTACAAATTAGGGTTTCAAAGGGTGCCTTTGATGTTCCAGAAGAGTAACTCTGCAAAACACTTTGGATGTTCTCAGAATCAAATCGCCCTTGAAGATTCTCTTGTAACCTTGAGATTGTGGATACTGCATTTGAGGATGAGGATGAGCATGAGGCTCGACACACGCCTGCTGCCAAAGCGTGAGAACACCGATGGTTTGAATGAACTGAACAGGGGACCTAGGGCCAAGGGTGGCAAGAACCAAAAGGTTTTTGCACCGACTGTTCTTGCTGTGAAAGGGCAGAATTTGCCTACTGTTGCTGATGAAGAGAAAGAGAAGACTTCTAATATTCCAGACCTTAATACAAGTGGGCAGTTTGTTGGGCTTGCAGAGATGATTGGTCCTGTTGATTTTAACAAAAGTTTGGAGTACTGGCAGCAAGATAAATGGAATGGTTGTTTTCCTTTGAAGTGGCACATTGTTAAGGATGTTCCCAACAATGTGTTGAGGCACATTATTTTGCTGAACAATGAAAACAAACCTGTTACAAACAGTAGGGATACACAGGAGGTATTGTTGGATTTAGCAGCTGCAGATCTTGATAATGATGGATCAATCAGTAAATCGGACTTTGTCATATACAAGCTTAAGCAAATGGGGAAGATTACTGAGATAGACATTCTACAAATTAGCAAACAATTTGATTCCTTAGACCATGGCATATGCGGCAAGATCACTCTAGCTGACCTCATGGAAACTGTCTAA 750 0.416 MLYKLGFQRVPLMFQKSNSAKHFGCSQNQIALEDSLVTLRLWILHLRMRMSMRLDTRLLPKRENTDGLNELNRGPRAKGGKNQKVFAPTVLAVKGQNLPTVADEEKEKTSNIPDLNTSGQFVGLAEMIGPVDFNKSLEYWQQDKWNGCFPLKWHIVKDVPNNVLRHIILLNNENKPVTNSRDTQEVLLDLAAADLDNDGSISKSDFVIYKLKQMGKITEIDILQISKQFDSLDHGICGKITLADLMETV* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7084 249 PANTHER YTH DOMAIN-CONTAINING PROTEIN ECT2-RELATED 115 189 - -
Psa5g7084 249 PANTHER YTH DOMAIN-CONTAINING PROTEIN ECT2-RELATED 58 105 - -
Psa5g7084 249 Pfam YT521-B-like domain 116 189 IPR007275 GO:0003723
Psa5g7084 249 ProSitePatterns EF-hand calcium-binding domain. 194 206 IPR018247 -
Psa5g7084 249 Gene3D ph1033 like domains 101 195 - -
Psa5g7084 249 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 115 189 IPR045168 -
Psa5g7084 249 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 58 105 IPR045168 -
Psa5g7084 249 ProSiteProfiles YTH domain profile. 64 198 IPR007275 GO:0003723
Psa5g7084 249 SUPERFAMILY EF-hand 189 246 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g7084 Psa-Chr5 578077885 578079104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g7084 192 247 Ion Channels AT4G18160 66.071 3.31e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7084 - K20102 cit:102618530 163.31