Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7076 ATGTCACCAGAAGATGAGGACATGAAGTTTGAAGTGCGTGCTACATTGGGTCATCCATTGAGAAACTATTGGACTATGGCTATATTGCAGTGTTACATAGATTCCATGGTGAATCCTAGAGGTTGGGAAGAGATGTTGGGGCAGAGCATAAATAAGGTTACTTATGTGAAGTTTGAAAATGTTGGACCTGGGTCAAACACGGATGGTAGAGTGGATTTACCTGGTGTTAGAGTTCTTGGCAACCATAATCAAGCACTTGTTTTCACTGCTTCCTATTTCTTAGATGCTGACTCTTGGATTCCCACTAGAGGAGATGGGGAAAGTCGTACAACTCCAAGAAATGGTGTTGCTGCTAGAAATGGTGAAGGTGGTGTTGTTCCTAAAGGAGAAGACTGTGTGGGGGTGTTGTTTTGGCTTCTCATGTGGGTGAAAAGTTTTACTATGTCACCAGAAGATGAGGACATGAAGTTTGAAGTGCGTGCTACATTGGGTCATCCATTGAGAAACTATTGGACTATGGCTATATTGCAATGTTACATAGATTCCATGGTGGATCCTAGAGGTTGGGAAGAGATGTTGAGGCAGAGCATAGATAAGGTTACTTATGTGGAGTTTGAAAATGTTGGGCCTGGGTCAAACACGAATGGTAGAGTGGATTGA 660 0.4273 MSPEDEDMKFEVRATLGHPLRNYWTMAILQCYIDSMVNPRGWEEMLGQSINKVTYVKFENVGPGSNTDGRVDLPGVRVLGNHNQALVFTASYFLDADSWIPTRGDGESRTTPRNGVAARNGEGGVVPKGEDCVGVLFWLLMWVKSFTMSPEDEDMKFEVRATLGHPLRNYWTMAILQCYIDSMVDPRGWEEMLRQSIDKVTYVEFENVGPGSNTNGRVD* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7076 219 Gene3D - 3 107 IPR012334 -
Psa5g7076 219 PANTHER PECTINESTERASE 1 104 - -
Psa5g7076 219 PANTHER PECTINESTERASE 145 219 - -
Psa5g7076 219 SUPERFAMILY Pectin lyase-like 9 108 IPR011050 -
Psa5g7076 219 SUPERFAMILY Pectin lyase-like 149 218 IPR011050 -
Psa5g7076 219 Pfam Pectinesterase 6 97 IPR000070 GO:0030599|GO:0042545
Psa5g7076 219 Pfam Pectinesterase 150 218 IPR000070 GO:0030599|GO:0042545
Psa5g7076 219 Gene3D - 129 219 IPR012334 -
Psa5g7076 219 PANTHER PECTINESTERASE 145 219 - -
Psa5g7076 219 PANTHER PECTINESTERASE 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g7076 Psa-Chr5 577910402 577912755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g7076 158 218 Carbohydrate Esterase AT2G45220 38.710 8.18e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7076 K01051 - gmx:102665195 124.405