Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7074 ATGGTGGATCCTAGACGTTGGGAAGAGATGTCGGGGAAAGGCATAAATAAGGTTACTTATGTGAAGTTTGAAAATGTTGGACCTGGGTCAAACATGGATGGGAGAGTGGATTGGCCTGGTGTTAGAGTTCTTGGCAACCATAATCAAGCACTTGTTTTCACTGCTTCCTATTTCTTAGATGTTGACTCTTGGATTCCCATTAGAGGTGTTCCTTATGATAGTGAACTATAA 231 0.4156 MVDPRRWEEMSGKGINKVTYVKFENVGPGSNMDGRVDWPGVRVLGNHNQALVFTASYFLDVDSWIPIRGVPYDSEL* 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7074 76 PANTHER PECTINESTERASE 1 74 - -
Psa5g7074 76 SUPERFAMILY Pectin lyase-like 11 73 IPR011050 -
Psa5g7074 76 Pfam Pectinesterase 2 60 IPR000070 GO:0030599|GO:0042545
Psa5g7074 76 Gene3D - 1 76 IPR012334 -
Psa5g7074 76 PANTHER PECTINESTERASE 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g7074 Psa-Chr5 577906219 577906449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g7074 1 76 Carbohydrate Esterase AT2G45220 45.455 2.94e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7074 K01051 - gmx:102665195 94.7449