Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7072 ATGTCGGGGCAGGGACTTGATAAGGTTACCTATGTGAAGTTTGAGAATCTTGGACTTTGGTCAAACACGGATGGTAGAGTGGATTGGCCAGGTGTTAGAGTTCTTGACAACCATAATCAAGCACTTGTTTTCACTGCTTCCTATTTCTTAGATGCCGACTCTTGGATTCCCACTAGAGGAGATGGGGAAAGTCGTACAGCTCTAAGAAATGGTGTTGTTGTTGGAAATGGTGAAGGTGGTGTTGTTCCTGAAGGGGAAGACTGTGTGGGGTGTTGTGTTGGCTTCTCATGTGGGCCAAAAGATTCCATGGTGGATCCTAGAGGTTGGGAAGAGATGTCGGGGCAGGGCATAAATAAGGTTACATATGTGGAGCTTGAAAATGTTGGATCTGGGTCAAACACATATGGTAGAATGGATTGGCCTGGTGTTAGAGTTCTTGGCAACCATAATCAAGCGCTTGTTTTCAATGCTTCCTATTTCTTAGATGCTGACTCTTGGATTCCAACTAGAGGTGTTCCTTATGACAGTGAACTATAA 537 0.4451 MSGQGLDKVTYVKFENLGLWSNTDGRVDWPGVRVLDNHNQALVFTASYFLDADSWIPTRGDGESRTALRNGVVVGNGEGGVVPEGEDCVGCCVGFSCGPKDSMVDPRGWEEMSGQGINKVTYVELENVGSGSNTYGRMDWPGVRVLGNHNQALVFNASYFLDADSWIPTRGVPYDSEL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7072 178 Gene3D - 94 178 IPR012334 -
Psa5g7072 178 Gene3D - 1 64 IPR012334 -
Psa5g7072 178 SUPERFAMILY Pectin lyase-like 101 175 IPR011050 -
Psa5g7072 178 Pfam Pectinesterase 4 53 IPR000070 GO:0030599|GO:0042545
Psa5g7072 178 Pfam Pectinesterase 101 164 IPR000070 GO:0030599|GO:0042545
Psa5g7072 178 SUPERFAMILY Pectin lyase-like 6 64 IPR011050 -
Psa5g7072 178 PANTHER PECTINESTERASE 1 60 - -
Psa5g7072 178 PANTHER PECTINESTERASE 101 176 - -
Psa5g7072 178 PANTHER PECTINESTERASE 1 60 - -
Psa5g7072 178 PANTHER PECTINESTERASE 101 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g7072 Psa-Chr5 577892606 577895010 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g7072 5 58 Carbohydrate Esterase AT2G45220 44.444 1.80e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7072 K01051 - gmx:102665195 97.8265