Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7067 ATGCAATTAGCTTCTAACTCTGAATCCCAACCCATCTTGAATCACTCCTGTGAAATTATTCCTGACAATGACGAGGAGGAGGAGGAGGATATAGAGAATGTTCGCCTTCACCACTCTTCTCATCTTCTTGTTACAGATCAGCCACAATGCCGAATATGCCTTGATTTTGAAGGAGAAGACTTAATTGCCCCCTGCCATTGCAAAGGTACACAAAAATATGTCCATAGATCATGTTTGGATAACTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCCTATTACGACCCAATGTCCCAAAAGATCGCTGGTGGTTGAGGTTGAAGTTTCAGTTCCTTGTTGCCAGAGATCATGCATTCATTTTCATCATTGTTCAACTGGTTGTTGCTTTCTTGGGGGTGCTTATTTACAAATTCTATGGGGATGAACTTAGAGAAATGTTTGGTTATGAAGAACATCCCTATGGATTTTATACAATGGCTGTTCTCGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATTGCAATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAGTTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCCGAACTCGACCCCAGCCATGTGACAGAACTAAGGATGCTGGGCCTTTACTAG 714 0.4216 MQLASNSESQPILNHSCEIIPDNDEEEEEDIENVRLHHSSHLLVTDQPQCRICLDFEGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFLLRPNVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7067 237 Pfam RING-variant domain 50 97 IPR011016 GO:0008270
Psa5g7067 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 102 IPR013083 -
Psa5g7067 237 ProSiteProfiles Zinc finger RING-CH-type profile. 42 104 IPR011016 GO:0008270
Psa5g7067 237 CDD RING_CH-C4HC3_MARCH 50 98 - -
Psa5g7067 237 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 236 - -
Psa5g7067 237 SUPERFAMILY RING/U-box 46 101 - -
Psa5g7067 237 SMART ringv_2 49 98 IPR011016 GO:0008270
Psa5g7067 237 PANTHER OS02G0132300 PROTEIN 9 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g7067 Psa-Chr5 577833010 577835093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g7067 24 196 C3H Transcription Factor Family AT1G50440 67.052 2.08e-83 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7067 - - gmx:100789593 420.239