Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7061 ATGGATATGGCTAATCAAAATCAAAAAAGGAAAAGCACAGGTAGGAAAAAGATTGAGATCAAGAAACTTGACAAAGAGTCCAACAAACAAGTGACATTCTCAAAAAGAAGACAAGGTTTATTCAAAAAAGCAAGTGAACTTTGTATCCTATGTGATGTTCATGCATCCATCATTGTTTTTTCTGGTGCTCACAAGCTCTTTTGTTTCGGTCATCCCGACACCGACGCAATTATCGACAGTTATGTCAAGGAATCTCTCGATTTCGAGAGGTTAAAGTTAGAAGAATGTTGTTCGATTTACAAAGAGTATAATAAACAATATGAAGAAGTGTTGAAGATTCTGGACATGGAGAAGGAACTTTTGGAAATCGAAAAGTTGGCTAGGGTTTCGAAAAGAGGGGCTTGGTGGAATGAAGATATTGATGAAATGTGTATTGATGAACTTCAACAATTTATGGTTTCTATGTATGAGTTTAGAGATAAGCTTTTTGAAAGGGATCATCAACGTATGATGGAGTTTGCCATGTTGGAGAATTTTTAG 540 0.3574 MDMANQNQKRKSTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCILCDVHASIIVFSGAHKLFCFGHPDTDAIIDSYVKESLDFERLKLEECCSIYKEYNKQYEEVLKILDMEKELLEIEKLARVSKRGAWWNEDIDEMCIDELQQFMVSMYEFRDKLFERDHQRMMEFAMLENF* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7061 179 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Psa5g7061 179 PANTHER MADS BOX PROTEIN 10 174 - -
Psa5g7061 179 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Psa5g7061 179 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Psa5g7061 179 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Psa5g7061 179 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Psa5g7061 179 Coils Coil 104 124 - -
Psa5g7061 179 CDD MADS_MEF2_like 14 85 IPR033896 GO:0000977|GO:0045944
Psa5g7061 179 Gene3D - 26 95 IPR036879 GO:0003677|GO:0046983
Psa5g7061 179 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 10 174 - -
Psa5g7061 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 69 IPR002100 GO:0003677|GO:0046983
Psa5g7061 179 SUPERFAMILY SRF-like 14 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g7061 Psa-Chr5 577504606 577506468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g7061 10 151 Type I MADS-box Gene Family AT5G60440 42.000 9.57e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g7061 SRF-TF 6.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7061 - - cam:101502875 199.134