Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7043 ATGAAAGTTGATAGCAAAGTGAAAGAAATAAGTATGTTGCTTCTTCGTATGCTTCCACTTCCCTATGCGTCCTTTCCACACAACATTCACCGCCGTTTTTCCTGCTCCCTCCCCAATTTCACTAAACCTCCACTTCCCCAATTTCACCATAACACTAGACCAACTACGCAGCAGCAGCGTTGTCGTTTGGGGATTGGGGATGGCGCTGTCACTGATTGGGAACTGCACGAAGGACGTATGGCGGTTTCAACATTTCTTCAACAAATGGGCGTATCCTCGGAGGTATCCCATTCAATCGCATCAAACTCCCCATCCTATCTCAACATGTTGGTGGAAACTGTCAGGGATTTGGAGCACTTATCTTCCATGGAGGATGATAACTCCTCCGTCTTCAATTTCAACTACAGAGATAAGATTCTTCATGTCGCTTCTCTCAAAGGTGATAACGGTAAACTAGCTTTTTTTGAGAGTCTCGGTTTCACTCTCTCTTCCTCTATGAATCTTGCTACCTATATATCCTCCTCCCCTCACACACTTCCTTCTCTCATAAACAAGGTTGCGTCTATCAAACAACTCCTTTTTCCTCCCAATCATACTCAATTCCTTATCAATAATATTCGCCTCCTCATGCGCAGCTTATCCATTTCAATACTAGATGAAGATCTACAACATACTTTCTCCTTTTTCCAAAAGCTTCAAGCAAGGCGTGGAGGTCTTAATATTCTTGCTTCTCACGAAGAAGCTTTCCGCTGCTTCATCGAAACATTTCCTACTATACTTTTCTTATCACTAGATAATCACATCTCACCTATACTCAATTTTCTGCAACATATTGGAATCCCCGCCGATCGCATCCCAAACATAGTGCTGGCTTTTCCTCCTATTCTGCTCTCCAATCTTCAACTCCTTCAAACTAGACTAAAAGCCTTGAACCAGATTGATGGCGTCGATGAAGATTATGCCAAGTTGATGCTAAAATATCCGTGGGTTCTATCTCCAAGCATTCAAAACAACTATAAAGAAGTCCTTGCCTTTTTATATTCCGCAAAGATTCCAAAGACCCGGATAGACCGTGCAATAAAAAAACAACCTCAACTATTGGGTTGTTCAACTAGCAAGATGAAGCTGATGGTGGATCAGTTTGCCGAACTAGGTGTTCAAAGGAAAAAGTTGGATCAGGTTATCACTAAAAGTCCTCAGCTATTATTACAGAGACCTGAAGACTTTCTGCAGGTTGTTGTGTTCTTTGAAAATATGGGTTTTGATAAAGAAAACATTGGGAGACTACTTGCTCGCTGCCCTGAAATTTTTGCCGCCAGCATTAGTAACACTTTACAGAGAAAGATTGATTTCCTTAGTAGAATTTGTCTTTCTAAAGCTTACCTTCCCGTGGTTATCAAAAAATATCCAGAACTACTTGTGTTTGATATTGACAGAACCTTGCCTCAACGGATAGTGTACTTGATGAAGCTAGGACTTTCAAAGAAGGAAGTTGCATATATGGTACGGACATTTCCTGCTCTACTTGGGTACAGCATAAACGAGGTTCTGAGGCCAAAAATAGAATTTCTGGTGAACATAATGAAGAGGCCATTAAGAGATGTGGTGGGGTACCCTAGGTATTTTAGCTATTCACTAGAAAAGAAGATAAAGCCAAGATATTGGGTTCTGAAAGGAAGGAATATCCAATGTAGCTTAAAGGATATGCTGGCGAAAAATGATGAAGAATTTGCTGCTGAATTTATGGGTGTTGAAACTCTGTCTTCACATGATAGACTGTAA 1782 0.4091 MKVDSKVKEISMLLLRMLPLPYASFPHNIHRRFSCSLPNFTKPPLPQFHHNTRPTTQQQRCRLGIGDGAVTDWELHEGRMAVSTFLQQMGVSSEVSHSIASNSPSYLNMLVETVRDLEHLSSMEDDNSSVFNFNYRDKILHVASLKGDNGKLAFFESLGFTLSSSMNLATYISSSPHTLPSLINKVASIKQLLFPPNHTQFLINNIRLLMRSLSISILDEDLQHTFSFFQKLQARRGGLNILASHEEAFRCFIETFPTILFLSLDNHISPILNFLQHIGIPADRIPNIVLAFPPILLSNLQLLQTRLKALNQIDGVDEDYAKLMLKYPWVLSPSIQNNYKEVLAFLYSAKIPKTRIDRAIKKQPQLLGCSTSKMKLMVDQFAELGVQRKKLDQVITKSPQLLLQRPEDFLQVVVFFENMGFDKENIGRLLARCPEIFAASISNTLQRKIDFLSRICLSKAYLPVVIKKYPELLVFDIDRTLPQRIVYLMKLGLSKKEVAYMVRTFPALLGYSINEVLRPKIEFLVNIMKRPLRDVVGYPRYFSYSLEKKIKPRYWVLKGRNIQCSLKDMLAKNDEEFAAEFMGVETLSSHDRL* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7043 593 PANTHER CGI-12 PROTEIN-RELATED 130 411 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 PANTHER CGI-12 PROTEIN-RELATED 406 585 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 Pfam mTERF 272 578 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 SMART mt_12 286 316 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 SMART mt_12 250 281 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 SMART mt_12 357 387 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 SMART mt_12 392 422 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 SMART mt_12 499 531 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 SMART mt_12 321 352 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 SMART mt_12 427 458 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 SMART mt_12 532 563 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 SMART mt_12 463 494 IPR003690 GO:0003690|GO:0006355
Psa5g7043 593 Gene3D Transcription termination factor 3, mitochondrial 370 588 IPR038538 -
Psa5g7043 593 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 406 585 - -
Psa5g7043 593 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 130 411 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa5g7043 mTERF 1.1e-92 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7043 K15032 - gmx:100802127 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g7043 5 576328861 576336415 Psa5g7043 5 576328861 576336415 ECH