Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7015 ATGGACCTTCTAAGATTAGAACCATGTTCATCTCATAATTTGAATCTCTCATTTTCTGACAAGAGAAACACAGAAAATGAAGAGAAAAAACATCTTCTACTTCTTGATTTAAGTCTTCCTAGCAAAGAACATTCCGGTGACGACGAGTCGTCGAAGCAAGAACTCAATCTCATAAACTGTTTCGATACAGACGCGTCGAATTCCATGAACTCGTCCACGGAATCTAATCATGGTAATGAATTAGAGCCAAGGATTTTCTCATGCAACTACTGTCAAAGAAAGTTTTATAGTTCACAGGCACTTGGTGGACACCAAAATGCACACAAAAGAGAAAGAACTATGGCGAAAAGAGGATACAAAAGTTCCGTTTCGCTAGATTTTGAACACAGGTACTCAAGTTTGGCTTCTCTACCTTTGCATGGCTCATATAACAGATCACCATCATCATCATTACCACTTGGAATTCAGGTGCATTCTTCAATGATTCATAAACCTTCTTATCAAGCACCGTTTTTCGGTTTGTCTCGTTCGCGTGTTCAAAACCAGTGGCAGAAGCTGCCTGTGTATTCACAACCAGCCATCGGAAATCTTGCATCAGAAACGGATGGATCATCCTTTTCTCCAACAAAGGTTCAAGATGGATTTGGAGGATACTGGTTTGGTAACAGTGCTACCGCTACTGATACACGTTTGAAGACTAAACAAGATGAGTTGCAGAAGCTTGATTTGTCCCTCAAACTCTAA 744 0.4019 MDLLRLEPCSSHNLNLSFSDKRNTENEEKKHLLLLDLSLPSKEHSGDDESSKQELNLINCFDTDASNSMNSSTESNHGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTMAKRGYKSSVSLDFEHRYSSLASLPLHGSYNRSPSSSLPLGIQVHSSMIHKPSYQAPFFGLSRSRVQNQWQKLPVYSQPAIGNLASETDGSSFSPTKVQDGFGGYWFGNSATATDTRLKTKQDELQKLDLSLKL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7015 247 Gene3D Classic Zinc Finger 62 136 - -
Psa5g7015 247 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 27 247 - -
Psa5g7015 247 SUPERFAMILY beta-beta-alpha zinc fingers 83 114 IPR036236 -
Psa5g7015 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 27 247 IPR044246 GO:0009788
Psa5g7015 247 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Psa5g7015 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g7015 Psa-Chr5 573689854 573691427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g7015 53 247 C2H2 Transcription Factor Family AT5G10970 42.523 2.24e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g7015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7015 - - gmx:100812573 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g7015 5 573689854 573691427 Psa5g7015 5 573689854 573691427 ECH