Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7009 ATGAGTAAAAGCCAAGGAGCATTAGAGGCGGCAAAGAGGGAAAAGGAAAACTTAAGTTCTGTTAGTGCGAAACTTAACTACTCGAGAATGGCTGATAAGAAGAGTTCAATTGCAATTTTCGACTTTCAATTGTTAGAAGGTGCAACAAACAACTTTTCCAGAGATAATATTATGGGAGAGAGTGGTTCTAGAATTGTTTACCGAGCTCGTTTCGATGAACATTTCAAGGCTGCTGTGAAGAAAGCAGATAGTGATGCGGATAGAGAATTTGAGAATGAAGTGAGTTTGTTGAGCAAGATTCGGCATCAGAATATCATAAAACTCCTAGGCTATTGCATTCACGGTGAATCGAGGTTTCTTGTTTACGAGTTCATGGAGAGTGATTCTCTCGAAACTCAATTGCATGGTCCTACTCGCGGATCGTCTTTAACTTGGTATATCCGATTAAGAATTGCAATTGATGTTGCTAGAGCATTAGAATATCTCCACGAAAACTCCAATCCTCCTGTGGTTCATCGAGACTTAAAATCTTCCAATATTCTTCTGGATTCTGATTTTAACGCCAAGCTATCAGATTTTGGACTCGCTGTAGCTTCTGGCGTGCAACACAAGAACATGAAAATGTCGGGAACTTTAGGATATGTGGCACCCGAGTACATTTCACACGGTAAACTAACTGATAAGAGCGATGTCTATGCTTTCGGGGTTGTACTTCTAGAACTTCTTACCGGAAGAAAACCGATGGAAAACATCTCTTCAGACCAATATCAATCTTTGGTTTCATGGGCCATGCCTCAGCTAACTGACAGATCAAAGCTTCCAAGTATTCTAGATCCTGTTATCCAAAACACAATGGATTTGAAGCATCTATATCAGGTTGCTGCAGTGGCTGTGCTTTGTGTGCAAGCGGAACCAAGTTACAGACCACTTATAACAGATGTCTTGCACTCTCTCATTCCTTTGGTACCCTTAGAGCTTGGAGGATCACTCAGAGTTACAGAACCAATCAGCTCAGAGAATTTTCAATGA 1029 0.4091 MSKSQGALEAAKREKENLSSVSAKLNYSRMADKKSSIAIFDFQLLEGATNNFSRDNIMGESGSRIVYRARFDEHFKAAVKKADSDADREFENEVSLLSKIRHQNIIKLLGYCIHGESRFLVYEFMESDSLETQLHGPTRGSSLTWYIRLRIAIDVARALEYLHENSNPPVVHRDLKSSNILLDSDFNAKLSDFGLAVASGVQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENISSDQYQSLVSWAMPQLTDRSKLPSILDPVIQNTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPLELGGSLRVTEPISSENFQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7009 342 Pfam Protein kinase domain 56 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g7009 342 CDD STKc_IRAK 58 321 - -
Psa5g7009 342 PANTHER OS01G0253100 PROTEIN 15 333 IPR045271 GO:0004714|GO:0006468
Psa5g7009 342 Coils Coil 1 21 - -
Psa5g7009 342 Gene3D Transferase(Phosphotransferase) domain 1 125 323 - -
Psa5g7009 342 Gene3D Phosphorylase Kinase; domain 1 11 124 - -
Psa5g7009 342 SUPERFAMILY Protein kinase-like (PK-like) 31 318 IPR011009 -
Psa5g7009 342 SMART serkin_6 52 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g7009 342 PANTHER RECEPTOR-LIKE KINASE 15 333 - -
Psa5g7009 342 ProSiteProfiles Protein kinase domain profile. 52 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g7009 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g7009 Psa-Chr5 573515390 573519320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g7009 34 322 Receptor kinase-like Gene Family AT3G58690 48.495 6.84e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Psa5g7009 Pkinase 9.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7009 - - gmx:100811188 567.385