Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6998 ATGTGGAGTTCAAGCAGAGTCTCCGAAGAGGAACAGAGTGAACCTTTTCCATTCTCAACTTCTGTCTTCAATTTCTCTTCCGGAAACCCTAGAATCGAAGAAACTCGCGGCCTCATGCACTTCTTCCCCGACGAATCTCCTCCTTCTCTTCCGGTCGAACGGAAACCATTGGCATGTGTTCTAGGAGTACCAAATCACATGACATATGCGGATTTCTGCCAATTCTGTGGTTCGTTTATTCAGCATATTCTTGAAATGCGAATTGTCAGAATGGATTCAATGGAAGATCGATACAGTGTTTTGATTCGCTTCGATCAACAAGAATCCACGGATGCTTTCTACACTCATTATAATGGCCGACGTTTCTCATCTCTTGAGGTTGAGGTGTGTCGTGTTGTTTTTACATTAGATGTGCAGTATACAGGCTCCATTGAACATGCACAACCTTCCAATGCCACTTCAACTGAACAGCCTACATGTCCTGTTTGCCTTGAGCGATTAGATCAAGACACAAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAACAGCAGGCTGAAAAATCTATATGTTTCATTTGTCAAACCACCGAAAACCTTTGGATATGTGTTATATGTGGTTTTGTTGGTTGTGGAAGATATAAAGGAGGGCATGCGATAATTCACTGGAAAGAGACGCAGCATTGCTATTCCTTAGAAGTGGAAACTAAGCGCGTCTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTAGTTGAGCTGAACTCCCACTGTGTGCACGCAGACAGTGGATGTGGCAGCTGTGGAGATAATGCCATGAGAGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAATACAATGAGTTGCTTGCTACTCAACTCGAAAACCAAAAATTGTATTTTGAATCCTTATTACAACAAGTAGAACAAGAAACTGAAGGAAAAATTTCTGTAGCTGTTCAAAAGGCTGTGAGTCTCAAACAGCAAAAGATTCAGTCCAAGATCGATAGATGTAACAAAGAGAAGAAATTTATGGATGAGCTTAATGACAATCTTTTGAAGAATGAGGAGATTTGGAAAGCCAAGATGCTTGAGATTGAAGAGAGGGAGAAAAAAGCTTTAAAACGGACTGACGATAAGATAACGGGCCTAGAAAAGCAGCTTAGTGATCTCATGGTTTGTCTTGAGGGTGGAAAGGCGGTAGAACAGCTGCCATTGTTAAATGATACAACTGGTGCAACTGTCTCGGACATTTCAAAAGAATCCTCATCAACTTTGTAG 1377 0.411 MWSSSRVSEEEQSEPFPFSTSVFNFSSGNPRIEETRGLMHFFPDESPPSLPVERKPLACVLGVPNHMTYADFCQFCGSFIQHILEMRIVRMDSMEDRYSVLIRFDQQESTDAFYTHYNGRRFSSLEVEVCRVVFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFICQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADSGCGSCGDNAMREAILNSKVEAIVNEYNELLATQLENQKLYFESLLQQVEQETEGKISVAVQKAVSLKQQKIQSKIDRCNKEKKFMDELNDNLLKNEEIWKAKMLEIEEREKKALKRTDDKITGLEKQLSDLMVCLEGGKAVEQLPLLNDTTGATVSDISKESSSTL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6998 458 Coils Coil 399 419 - -
Psa5g6998 458 Pfam Ring finger domain 159 200 IPR001841 -
Psa5g6998 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 201 IPR013083 -
Psa5g6998 458 Pfam BRCA1-associated protein 2 51 147 IPR011422 -
Psa5g6998 458 ProSiteProfiles Zinc finger RING-type profile. 160 200 IPR001841 -
Psa5g6998 458 SMART ring_2 160 199 IPR001841 -
Psa5g6998 458 SUPERFAMILY RING/U-box 176 275 - -
Psa5g6998 458 Coils Coil 323 343 - -
Psa5g6998 458 CDD RING-H2_BRAP2 158 201 - -
Psa5g6998 458 SMART Zf_UBP_1 210 259 IPR001607 GO:0008270
Psa5g6998 458 Pfam Zn-finger in ubiquitin-hydrolases and other protein 211 270 IPR001607 GO:0008270
Psa5g6998 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 281 IPR013083 -
Psa5g6998 458 CDD RRM_BRAP2_like 59 139 - -
Psa5g6998 458 PANTHER BRCA1-ASSOCIATED PROTEIN 15 454 - -
Psa5g6998 458 ProSiteProfiles Zinc finger UBP-type profile. 194 287 IPR001607 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6998 156 200 C3H Transcription Factor Family AT1G72220 48.936 2.19e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6998 K10632 - gmx:100794688 776.548