Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6964 ATGGCTTTTTTCAAGGTTTTTTGTTGTGGAATTGCTTCGGATCGTAGCGGACGGGGGAAGAAACAGCCTCCATGGCGGGTGTTCTCTTTGAAGGAATTACATTCGGCTACGAATAATTTCAACTATGATAACAAGCTTGGCGAAGGAGGGTTTGGAAGTGTGTATTGGGGCCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCCGACATGGAATTTGCTGTTGAAGTTGAGATATTAGCAAGAGTGCGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCTGAAGGCCAGGAACGGCTTATTGTATACGACTATATGCCGAATTTGAGCCTACTGTCTCATCTTCACGGACAGCACTCAACAGAAAGCCTCCTTGATTGGAATCGACGGATGAATATCGCAATCGGGTCTGCCGAGGGAATTTTATACCTTCACGTCCAAGCAACACCGCATATCATTCATAGAGACGTCAAAGCAAGTAACGTGGTGTTGGATTCGGATTTCCAAGCGCGTGTTGCTGATTTTGGGTTTGCCAAGTTGATCCCCGACGGAGCAACACATGTGACTACAAGAGTTAAAGGCACCCTTGGCTACCTTGCCCCAGAATATGCTATGTTAGGCAAAGCAAACGAGAGCTGTGACGTCTACAGTTTCGGTATTCTCCTTCTAGAACTCGCTAGCGGCAAAAAACCACTTGAAAAACTAAGTTCCTCAATGAAACGATCGATAAATGATTGGGCACTACCGTTAGCTTGTGAGAAAAAATTTAGTGAACTGGCGGATCCAAGACTTAACGGTAACTATTCTGAAGAAGAGCTTAAAAGGGTCGTATTAGTTGCTTTAATATGTGCTCAGAATCAACCGGAGAAGAGACCAACGATGCTCGAGGTGGTGGATCTTCTGAAGGGTGAGTCGAAAGAGAAGGTTTCGCAGTTGGAGAATAATGAACTGTTTAAGAACCCTCTTGCTGTTGGAAATAACGATGAGATATTCGTATCAGCAGCTGAAGGGAGTTCAGACTTCATCTCAGAAGAGAAGGATTCGAAACATGAGATGGAAGAGAATAAAGAACCATGA 1107 0.4408 MAFFKVFCCGIASDRSGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSTESLLDWNRRMNIAIGSAEGILYLHVQATPHIIHRDVKASNVVLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLSSSMKRSINDWALPLACEKKFSELADPRLNGNYSEEELKRVVLVALICAQNQPEKRPTMLEVVDLLKGESKEKVSQLENNELFKNPLAVGNNDEIFVSAAEGSSDFISEEKDSKHEMEENKEP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6964 368 MobiDBLite consensus disorder prediction 348 368 - -
Psa5g6964 368 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Psa5g6964 368 PANTHER OS01G0750732 PROTEIN 1 365 - -
Psa5g6964 368 MobiDBLite consensus disorder prediction 350 368 - -
Psa5g6964 368 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6964 368 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6964 368 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Psa5g6964 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Psa5g6964 368 PANTHER BNAA05G14800D PROTEIN 1 365 - -
Psa5g6964 368 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Psa5g6964 368 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Psa5g6964 368 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6964 368 CDD STKc_IRAK 46 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6964 Psa-Chr5 571456702 571459318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6964 28 314 Trihelix Transcription Factor Family AT1G70460 50.172 2.09e-92 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Psa5g6964 Pkinase 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6964 - - gmx:100788153 666.766