Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6931 ATGGATTCTGAAATCAAGAATGCAAAGGTTGAAAAAATTGTGGGTCGTACTGGTTCAAGAGGGCAGGTGACTCAGGTTAGAGTGAGGTTTCTGGGTGATTCAAACCGTGTCATCATGAGGAACGTGAAAGGGCCAGTTAGAGAAGGTGATGTTCTTACCCTGCTTGAGTCTGAAAGAGAAGCAAGGAGGTTGCGCTAG 198 0.4596 MDSEIKNAKVEKIVGRTGSRGQVTQVRVRFLGDSNRVIMRNVKGPVREGDVLTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6931 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa5g6931 65 Gene3D - 1 65 IPR012340 -
Psa5g6931 65 CDD S1_S28E 8 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa5g6931 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa5g6931 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Psa5g6931 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 - -
Psa5g6931 65 SUPERFAMILY Nucleic acid-binding proteins 3 65 IPR012340 -
Psa5g6931 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6931 Psa-Chr5 569663602 569664501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6931 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G64140 83.077 5.95e-32 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6931 K02979 - cpap:110824129 84.7297