Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6928 ATGTGTTCAATTAAATTGATGTTGATTTTGTTAATCTCTCTAACACTATCATCACCATCGTTGTCGTCGTCATCAACATCATCGCATGCATTGATTCAACAGAACAATCTATCAGCTTATGATCTTCTCATGGAATACGGTTTCCCGATGGGTCTTCTTCCGAAAGGCGCGATTGGGTACACGTTGAACAGAGAAACGGGGCAATTTTCAGTGTTCTTCGAAAAAAGTTGTAGTTTCACTATTGAAAGTTACACGCTTAGTTACAAGTCTACTATCTCTGGCGTGATTTCTGAGAATAAGCTTTATAAACTCAAGGGTATTTCCGTCAAGATTGTGATTTTGTGGCTCAGTATTGTGGAGGTTTCTCGGAGTGGTGATGATATTGATTTTTCTGTGGGTATTACTTCTGCTAGTTTTGGGGCTGAGAATTTCCTTGAATGCCCTCAGTGTGGATGCGGATTCGATTGCGATAATGATCTTCGTTTAAACGTTTCTACAAATAGCATTGTTTTCTGGTGTCTGTCATATCAGTTTGCAGAAAGCCTTCTGGGTTTTGTTTGGTTTAAGCTTAAGTTGCAAAAGTTGTTATCTTTTTATTATACTAGTGCAGTATCAACTGGAGGCCAACAGGAAAGTGTGGTAACTGATTATGTACTCAAGCTTTCGTGCAGATTATTAAAGCAGTATCTTCTGCTACTATTGATAAACCAAGTGGCTTCTGGACTATTTCGCGCTATTGCAGCACTCGGTAGAAATATGATTGTCGCCAACACGTTCGGGTCCTTTGCACTTCTCACACTTCTTACATTAGGTGGCTTCATTATGTCCAGAAAGGATATCAAAAGCTGGTGGATTTGGGGTTACTGGATTTCACCTTTGATGTATGGACAAAATGCTATAATGGTGAATGAATTCCTCGGAGATAGTTGGAACCATTTTACACCAAATTCGAATAAAACACTAGGAATTCAAGTTTTGGAATCTCGCGGATTCTTCACAGACGCATATTGGTATTGGATAGGGGTTGGTGCATTAGTAGGATTTATGTTTCTTTATAACATTATATTCACCGTGGCTCTCACGCATCTCAATCCATTTGATAAGGCACAAGCAACTATAAATGAAGAATCAGAAGACAGCACAACAAATGGCACACACCAAGAAGTTGAATTACCGCGTATAGCAAGTTCAGGAGAATCCTCTAGCCGCAGACAGAAAAGAGGAATGGTTCTTCCTTTCGAACCACATTCGATAACCTTCGACGAAGTTGTGTATTCTGTCGACATGCCACAGGAAATGAAGATTCAAGGAGTAATGGAGGATAGGTTGGTGCTTTTGAAGGGTGTTAGTGGTGCATTTAGGCCTGGTGTTCTCACAGCGTTGATGGGAGTTAGTGGAGCTGGAAAAACTACTTTAATGGATGTTTTGGCTGGTAGGAAAACCGGTGGTTATATCGACGGGAGCATCAAAATTTCTGGCTACCCTAAAAAACAAGAAACGTTTGCTCGAATCTCTGGTTATTGTGAGCAAAATGACATCCATTCTCCTCATGTTACTGTCCATGAGTCATTGCTCTACTCGGCATGGCTTCGCTTACCAGCCGAAGTTGATTACAATACAAGAAAGATGTTCATTGAGGAAGTAATGGAACTAGTGGAGCTCAATCCATTGAGAAACTCTTTGGTTGGTTTGCCTGGCGTGAACGGTCTTTCAACCGAACAACGTAAGAGGCTAACTATAGCAGTTGAGTTAGTTGCCAACCCTTCCATAATTTTCATATTGAGCTTACTTGGCCTCACTCCACTCGCTGAACGTGTGAGCTTTCTCACAGAACAAATTGCCATTTTCACTGGTCCAACAGTTGGAGGACTTCTTAATGCAACATGTGGGAATAGACAAGCGGATGTGAACTCGCTGATGTTGCTATTGGCGTTGTTATGCCATTTGCTTCCGTTGCTATTCACGTACAGCGCTGCTTCGGCTGAACTCACCGTAAAGCCTTCGCTGAATTTGTCGAGAGCTTCTAGCATTGTTATGCTGGTTGCGTATTTTGCTTACTTGATCTTTCAGTTATGGACGCATAGGCAATTATTTGAAGCGGAAGATGAAGGGGAAGGGGAAGGTGAGAACAATGGAGCGGAAGAAGAGGCTGTGATTGGATTCTGGAGTGGATTTGCTTGGTTGGCTGGAATGACTGTGTTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTATCTGTGAGCTTTCTCAGCATAATCTTGCTTCCGATAGTTGGCAATGCGGCTGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTGGACATTTCCTTAGGTGTTGCATTGGGCTCTTCCACTCAAATTGCCATGTTTGTGGTAAATAAACATACTCTTAACTTTTATATTTATAAAGATTGCGGTTGA 2460 0.4146 MCSIKLMLILLISLTLSSPSLSSSSTSSHALIQQNNLSAYDLLMEYGFPMGLLPKGAIGYTLNRETGQFSVFFEKSCSFTIESYTLSYKSTISGVISENKLYKLKGISVKIVILWLSIVEVSRSGDDIDFSVGITSASFGAENFLECPQCGCGFDCDNDLRLNVSTNSIVFWCLSYQFAESLLGFVWFKLKLQKLLSFYYTSAVSTGGQQESVVTDYVLKLSCRLLKQYLLLLLINQVASGLFRAIAALGRNMIVANTFGSFALLTLLTLGGFIMSRKDIKSWWIWGYWISPLMYGQNAIMVNEFLGDSWNHFTPNSNKTLGIQVLESRGFFTDAYWYWIGVGALVGFMFLYNIIFTVALTHLNPFDKAQATINEESEDSTTNGTHQEVELPRIASSGESSSRRQKRGMVLPFEPHSITFDEVVYSVDMPQEMKIQGVMEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPAEVDYNTRKMFIEEVMELVELNPLRNSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFILSLLGLTPLAERVSFLTEQIAIFTGPTVGGLLNATCGNRQADVNSLMLLLALLCHLLPLLFTYSAASAELTVKPSLNLSRASSIVMLVAYFAYLIFQLWTHRQLFEAEDEGEGEGENNGAEEEAVIGFWSGFAWLAGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSSTQIAMFVVNKHTLNFYIYKDCG* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6928 819 Gene3D - 418 591 IPR027417 -
Psa5g6928 819 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 418 682 IPR003439 GO:0005524
Psa5g6928 819 Pfam Sodium/calcium exchanger protein 724 805 IPR004837 GO:0016021|GO:0055085
Psa5g6928 819 Pfam ABC transporter 446 592 IPR003439 GO:0005524
Psa5g6928 819 MobiDBLite consensus disorder prediction 374 406 - -
Psa5g6928 819 Gene3D - 592 810 IPR044880 -
Psa5g6928 819 SUPERFAMILY At5g01610-like 14 156 IPR036758 -
Psa5g6928 819 Pfam ABC-2 type transporter 220 305 IPR013525 GO:0016020|GO:0140359
Psa5g6928 819 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 223 594 - -
Psa5g6928 819 Pfam Plant PDR ABC transporter associated 310 373 IPR013581 -
Psa5g6928 819 Gene3D - 23 147 IPR036758 -
Psa5g6928 819 Pfam Protein of unknown function, DUF538 39 144 IPR007493 -
Psa5g6928 819 PANTHER ATP-BINDING CASSETTE TRANSPORTER 223 594 - -
Psa5g6928 819 MobiDBLite consensus disorder prediction 374 404 - -
Psa5g6928 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 592 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6928 Psa-Chr5 569610811 569615467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6928 578 805 Antiporters AT3G51860 56.164 2.30e-81 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6928 K08711 - gmx:100783377 611.298