Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6927 ATGGGCCTAAAACAAAAGCCCAAATCCCATAATATAAGAGCTTCTTCGTCACCCTGTGTCGTTACAAATTCCAATTCCATTTCATTGCATTGCATTGCTTTGAATTCAGTGATGGAAAAAGAGTACACTGAATCTTCACAGCATTTGAAGAAACCTAGAATTTCAGAAGAAACCAATTTGAGAATCAAAACTGAACTATGCAGAAGATTCATGCAAGGTATTTGTGTTCATGGATCCAAATGCAACTACGCTCATGGCTTCACTGAACTCAGAACTGCCCCCAAAGTATGCAGAATGTTCTTGTACAACAGACACTGTACCTATGGAAACACTTGTCGTTACCTTCATTCATCACTTCCTCTTCATCATGATCATGGTCATGGTCATCATTCTCGCATCAATGTCTCTTCTTCTGCTGCAAAACCAGAACTAGGGACAGTGCAGACTGCAAAACCAGGGACAAAGGAGAATGCAGGAAGCATGATCATGCAAACTAGTGCTGCTGCTGCTGCTACAACTGATGGCCACACTTCTGCACAAAACAATATAATGCCAACTTCTAGTTCTACTCCTGCTACAAATGCCTCTGCCAACCCAGCTGTGGTAACTCCCTCTTTCCATAAGAATGGACCCTATGCCTGTAAAAGCATAATCGACGAAAAGAAACTGCAAAGGGTAAGCCGCATCTATGGTGATTGGATTTAA 705 0.4184 MGLKQKPKSHNIRASSSPCVVTNSNSISLHCIALNSVMEKEYTESSQHLKKPRISEETNLRIKTELCRRFMQGICVHGSKCNYAHGFTELRTAPKVCRMFLYNRHCTYGNTCRYLHSSLPLHHDHGHGHHSRINVSSSAAKPELGTVQTAKPGTKENAGSMIMQTSAAAAATTDGHTSAQNNIMPTSSSTPATNASANPAVVTPSFHKNGPYACKSIIDEKKLQRVSRIYGDWI* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6927 234 PANTHER CCCH ZINC FINGER/TIS11-RELATED 46 233 IPR045877 GO:0003729
Psa5g6927 234 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 46 233 - -
Psa5g6927 234 SMART c3hfinal6 93 118 IPR000571 GO:0046872
Psa5g6927 234 SMART c3hfinal6 61 87 IPR000571 GO:0046872
Psa5g6927 234 ProSiteProfiles Zinc finger C3H1-type profile. 61 88 IPR000571 GO:0046872
Psa5g6927 234 Gene3D - 51 119 - -
Psa5g6927 234 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 87 IPR000571 GO:0046872
Psa5g6927 234 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Psa5g6927 234 SUPERFAMILY CCCH zinc finger 60 92 IPR036855 GO:0046872
Psa5g6927 234 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6927 63 117 C3H Transcription Factor Family AT1G68200 41.270 8.70e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g6927 zf-CCCH 1.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6927 K15308 - cam:101493245 173.711