Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6891 ATGAAACTTCACTCTTCTCTTCTGATCTTCTTTCATTCCTTCTTCCATTTCTACACTCTTTCTTCTGCACTCAACTCAGATGGGTTGGCACTTCTATCATTCAAATCCCACTGGACATCACTTCCACCTCTCATCAACTCGACATGGATTCCATCTCATTCAACACCATGTTCATGGGCTGGTCTCAAATGCGATTCTTCCAACCGCGTAATCTCTCTCAACCTTTCCTATCTTGATATTTACGGTCAACTAGGACCAGAAATCGCAAACTGCACACAACTCCAACATATAGACCTTAGTTACAACTACTTCAATGGCCAAATACCTCACTCTTTCACCAACCTTCACAAACTCAAATATCTCAGTCTTTCTGTTAATCTTCTCACTGCTCCATTTCCTCATTTCTTGTCTCAAATCCCTCACCTCGAGCTTCTTGATCTCTCTTATAACCAACTTCACGGTTCCATTTCAACTATCATTTCCAACATGACTCATCTTCGTGAGTTCTATCTCCAATATAACAACTTCTCTGGTGCAATTCCTTCGTCTATTGGGAACTGTACTGAGCTACAAGACTTGTATTTGAATGATAATCAGTTGGAGGGTGTTCTTCCTTACGGTCTCAACAATCTCAATCGTCTTGTTCACTTTCATGTTGCCAACAATAAATTAACAGGTACTATTCCATTGGGTTGCTCCGGTTGTCGAAATTTACAGCTTTTGGATATCTCATTCAATGATTTTGGTTGTGGCATTCCATATAGCATTGGTAATTGTACTGTTTTATCACAATTTGCTGCTGTGAAATCTAACTTGCTTGGAACTATTCCATCTTCCATTGGTCTGCTCGCCGAGCTTTCGGTTTTACGCCTTTCTGAGAATCATTTGTCAGGAAAAATACCTCCTGAGATAGGTAACTGTAAGTCTTTGAATGAGTTGCATTTGTATTCGAATCGACTTGATGGAAAAATTCCGAGTGAATTGGGGAAACTCAGTGAACTAAAGGAACTTGAACTGTTTTCTAATCAATTGAGCGGCGAAATTCCGCTTGAGATATGGAAGATTCGAAGTCTCGAGCATCTGTTTGTGTATAACAATAGCCTTTCTGGGGAGCTTCCTGTGGAGATGACAGAGCTCAAGAACCTTAAGAACGTTTCATTGTTTAACAACATGTTCTCCGGAGTCATACCTCAAAGCTTGGGAATTAACAGCAGTTTGGTACAGTTGGATTTTGTGAATAACAGGTTCACTGGGAACCTTCCACCAAATCTTTGTTTTGGAAGAAAGTTGAGTGTTCTGAATATGGGAATCAATCGACTTCGAGGGAGAATACCTCTTGATGTTGGAAGATGCACAACTCTAAGAAGGGTCATTCTTAAACAAAACGAATTTACCGGGCCTCTTCCGGAGTTTGAAAGAAATACCAATCTGTTATTCATGGAGATCAGCAACAACAGAATTAACGGATCAATTCCGTCGAGCTTAGGAAACTGCACGAATCTCACGGATTTAATGTTGTCGATGAACAAACTTAGTGGGCGTATACCACCGGAGTTAGGAAGCCTTGTGAATCTTCGGACGCTGGATCTTGCTCACAATAACTTAGAGGGTCCTTTGCCTTTTCAGCTCTCAAACTGTACCAAGATGGACAAGTTTGATGTGGGATTTAATTTCCTGAATGGTTCGTTGCCGTCGAGTTTGCAGAGGTGGACAAGGCTAAACACACTAGTTTTGAATGAGAATTATTTCAGTGGCGGCATTCCTGCTTTCTTGTCGGCTTTTAAAGATCTTCGTGAACTACAGCTTGGCGGAAATATGTTTGGAGGGAAAATTCCTACCGCGGTTGGGACATTGCAGAATTTGATATACGGGTTGAATCTAAGTTCTAATGGCCTGATAGGAGACATACCCGTGGCAATTGGAGAGCTGAAAACTCTACAGATGATTGATCTTTCTCGGAACAATTTGACAGGAAGCATACAAGTTCTTGACGAACTCCCTTCATTAGTCGAAATCAATCTTTCGAACAATTCTTTTCAGGGTCCTATACCGAAGAACCTAATGAAGCGGTTTATTTCTCGCTTGTCGTCATTTTCGGGGAATCCCGGGCTATGTATCAGTTGTTCGCCATCCAGTGGCTTGGTTTGCATTGAAGGCAGCTATGTAAAACCATGTGACAACAACAAACCTACGAGTAACAAAGGTCTCAGTAAAACTGCAATTGTGATGATAGCTATAGGATCCTCCATATTTGTTGTTTTGCTGTTGATGGGATCAGTTTATATCTTTCCTTATGGCAGAAAATCTAAGCAGCAAGTCAATAGCACGGATAACGGAGGTCCTTCGTCCCTTCTTAACAAAGTCATGGAGGCTACATCGAACCTAAGTGATCGGCATATTATCGGCAGAGGAGCTCATGGAGTTGTCTATAAAGCCCTTGTAAGTCAAGACAAAGCTTTTGCCGTAAAGAAGCTAGCATTTGCTGCCAGCAAAGGTAAGAACTTGAGCATGATTAGAGAAATTCAAACCCTTGGACAAATTAGGCATCGGAATCTCGTCAAATTGGAAAACTTTTGGTTGAGACAAGATTACGGTCTAATTCTATATAGCTACATGCCAAACGGAAGCCTTTACGATGTCTTGCATGAAAAGAAACCAGCACCGTCTTTAGAGTGGAATGTCCGATATAAGATAGCTATCGGAATTGCTCATGGGTTGACTTACCTCCATTATCACTGCGATCCTCTCATAGTGCACCGAGATATCAAACCAAACAACATACTTCTAGACTCGGATATGGAGCCTCACATTGCAGATTTCGGTATTGCCAAACTTTTGGACCAGTCCTCTACATCAAATCCTTCCTTATCCGTGCCTGGCACAATCGGTTATATTGCACCAGAGAATGCTTATATGACAGTAAGTAGTAGGGAGTGTGATGTTTACAGCTACGGAGTAGTTTTGCTTGAGCTGATAACGAGAAAGAAGGTAGTAGATCCATCGTTTACGGAGGGTACCGATTTAGTCGGCTGGGTTAGATTGTTGTGGAGTGAAACAGGAGAAATTAATCAAATTGTTGATTCAAGCCTTGCAAATGAGTGTCTAGATACAAATATAATGGAAAATGTCGCAAAAGTGCTTATGGTGGCTTTGAGATGTGCCGAGAATGATCCACACAAGAGGCCTAAGATGACAGATGTTACTAAGCAATTATCAGATTCTAATCCACAGAAACTTGATCAATCATGGGAGATCAATCGGTGA 3264 0.4127 MKLHSSLLIFFHSFFHFYTLSSALNSDGLALLSFKSHWTSLPPLINSTWIPSHSTPCSWAGLKCDSSNRVISLNLSYLDIYGQLGPEIANCTQLQHIDLSYNYFNGQIPHSFTNLHKLKYLSLSVNLLTAPFPHFLSQIPHLELLDLSYNQLHGSISTIISNMTHLREFYLQYNNFSGAIPSSIGNCTELQDLYLNDNQLEGVLPYGLNNLNRLVHFHVANNKLTGTIPLGCSGCRNLQLLDISFNDFGCGIPYSIGNCTVLSQFAAVKSNLLGTIPSSIGLLAELSVLRLSENHLSGKIPPEIGNCKSLNELHLYSNRLDGKIPSELGKLSELKELELFSNQLSGEIPLEIWKIRSLEHLFVYNNSLSGELPVEMTELKNLKNVSLFNNMFSGVIPQSLGINSSLVQLDFVNNRFTGNLPPNLCFGRKLSVLNMGINRLRGRIPLDVGRCTTLRRVILKQNEFTGPLPEFERNTNLLFMEISNNRINGSIPSSLGNCTNLTDLMLSMNKLSGRIPPELGSLVNLRTLDLAHNNLEGPLPFQLSNCTKMDKFDVGFNFLNGSLPSSLQRWTRLNTLVLNENYFSGGIPAFLSAFKDLRELQLGGNMFGGKIPTAVGTLQNLIYGLNLSSNGLIGDIPVAIGELKTLQMIDLSRNNLTGSIQVLDELPSLVEINLSNNSFQGPIPKNLMKRFISRLSSFSGNPGLCISCSPSSGLVCIEGSYVKPCDNNKPTSNKGLSKTAIVMIAIGSSIFVVLLLMGSVYIFPYGRKSKQQVNSTDNGGPSSLLNKVMEATSNLSDRHIIGRGAHGVVYKALVSQDKAFAVKKLAFAASKGKNLSMIREIQTLGQIRHRNLVKLENFWLRQDYGLILYSYMPNGSLYDVLHEKKPAPSLEWNVRYKIAIGIAHGLTYLHYHCDPLIVHRDIKPNNILLDSDMEPHIADFGIAKLLDQSSTSNPSLSVPGTIGYIAPENAYMTVSSRECDVYSYGVVLLELITRKKVVDPSFTEGTDLVGWVRLLWSETGEINQIVDSSLANECLDTNIMENVAKVLMVALRCAENDPHKRPKMTDVTKQLSDSNPQKLDQSWEINR* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6891 1087 MobiDBLite consensus disorder prediction 1061 1087 - -
Psa5g6891 1087 ProSitePatterns Protein kinases ATP-binding region signature. 801 824 IPR017441 GO:0005524
Psa5g6891 1087 SMART LRR_typ_2 188 210 IPR003591 -
Psa5g6891 1087 SMART LRR_typ_2 163 187 IPR003591 -
Psa5g6891 1087 SMART LRR_typ_2 331 355 IPR003591 -
Psa5g6891 1087 SMART LRR_typ_2 522 546 IPR003591 -
Psa5g6891 1087 SMART LRR_typ_2 283 307 IPR003591 -
Psa5g6891 1087 SMART LRR_typ_2 139 162 IPR003591 -
Psa5g6891 1087 SMART LRR_typ_2 666 690 IPR003591 -
Psa5g6891 1087 SMART LRR_typ_2 211 235 IPR003591 -
Psa5g6891 1087 Gene3D Transferase(Phosphotransferase) domain 1 872 1085 - -
Psa5g6891 1087 SMART serkin_6 795 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6891 1087 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 102 - -
Psa5g6891 1087 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 86 1069 - -
Psa5g6891 1087 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Psa5g6891 1087 Pfam Leucine rich repeat 625 678 IPR001611 GO:0005515
Psa5g6891 1087 SUPERFAMILY Protein kinase-like (PK-like) 780 1071 IPR011009 -
Psa5g6891 1087 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Psa5g6891 1087 Gene3D Ribonuclease Inhibitor 181 278 IPR032675 -
Psa5g6891 1087 MobiDBLite consensus disorder prediction 1068 1087 - -
Psa5g6891 1087 Pfam Protein kinase domain 798 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6891 1087 SUPERFAMILY RNI-like 349 699 - -
Psa5g6891 1087 Pfam Leucine Rich Repeat 237 259 IPR001611 GO:0005515
Psa5g6891 1087 Gene3D Ribonuclease Inhibitor 450 712 IPR032675 -
Psa5g6891 1087 Gene3D Ribonuclease Inhibitor 291 449 IPR032675 -
Psa5g6891 1087 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 86 1069 - -
Psa5g6891 1087 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 10 102 - -
Psa5g6891 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 917 929 IPR008271 GO:0004672|GO:0006468
Psa5g6891 1087 ProSiteProfiles Protein kinase domain profile. 795 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6891 1087 PRINTS Leucine-rich repeat signature 142 155 - -
Psa5g6891 1087 PRINTS Leucine-rich repeat signature 522 535 - -
Psa5g6891 1087 SUPERFAMILY RNI-like 72 435 - -
Psa5g6891 1087 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Psa5g6891 1087 Gene3D Phosphorylase Kinase; domain 1 763 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6891 Psa-Chr5 566950657 566956413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6891 22 1073 Receptor kinase-like Gene Family AT1G73080 50.874 0.0 1028
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa5g6891 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6891 - - gmx:100778035 1464.51