Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6887 ATGACTCTGCTATGGGCCTCGTTGATAGGGTCTCAAAATCGGAGTGCTTCTAACCGAGTAAAATCGGCTACTGAAAGAGAAAATGAGGCTTTTGTTTATATTGATACGGTCGGAGATCCAGGGAAATATGAGGTTACGAGGGACCGAGCTGTAAGAGATTGGGTGCTCGAGAGACTGCTGATAATATACACAGGAATTGGTTCTGGATATCCTGCAGATCCCGCAACCAAGTCTTGGCTAGAAAATCAAAACATTCTATCTTCGGTTTTTCCAACATTGGTTCGGTTTAGTTGGGGAACTCGCAGCACTTATTTTAAAAGTGTAAATAGAAGTTTTCTGCAAGGAGACAAAACAGGCAGACAAGAACTCCAAGGACCCGAAGCTTCAAGATTTTCTTCATGTCATGCAACTCGCGCAAAGTCTAGCTGTGGGAAACGACACTTAGTTGTATCCAATGATGGAGGAGAACTGGAAGAGCATTTCAGTCTTTGTGGCGGTGTCTCACAGGGCGTTGCAAGAGTCAGACAATCAATCTTCCAGGGAAGATATTACATGTTATGCCAGCTTACTACAGACGTTCAAAATGAGAAGAACAATGTTTCCAAGGATCAAGGACAAACTCTCAAACAACGAAGAGAAGAAGAGAGGAAAGCAGCTGAAGCTAGTGGAGATCACAGAGAATTGAGTCTGTTCATGCGCCCTGATACAATTGTAGAAAATGTTGCTCGGAAATATGTGGTGTAG 744 0.4328 MTLLWASLIGSQNRSASNRVKSATERENEAFVYIDTVGDPGKYEVTRDRAVRDWVLERLLIIYTGIGSGYPADPATKSWLENQNILSSVFPTLVRFSWGTRSTYFKSVNRSFLQGDKTGRQELQGPEASRFSSCHATRAKSSCGKRHLVVSNDGGELEEHFSLCGGVSQGVARVRQSIFQGRYYMLCQLTTDVQNEKNNVSKDQGQTLKQRREEERKAAEASGDHRELSLFMRPDTIVENVARKYVV* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6887 247 PANTHER RIBONUCLEASE H2 SUBUNIT A 44 110 IPR001352 GO:0003723|GO:0004523
Psa5g6887 247 PANTHER RIBONUCLEASE 44 110 - -
Psa5g6887 247 Gene3D Ribonuclease hii. Domain 2 62 108 IPR023160 GO:0004523
Psa5g6887 247 MobiDBLite consensus disorder prediction 206 226 - -
Psa5g6887 247 SUPERFAMILY Ribonuclease H-like 30 108 IPR012337 -
Psa5g6887 247 MobiDBLite consensus disorder prediction 198 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6887 Psa-Chr5 566815931 566817828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6887 33 106 Core DNA Replication Machinery Family AT2G25100 37.963 4.63e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6887 K10743 - psom:113338961 88.1965