Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6886 ATGCCACGTGTCAAGCTTTATTTGGTTCATGACGCTCGCCGCCCACAGACATCCTACTATAAGGCACGCACGTTGGTGAACAAACAAACATCAGTTTGGTCTCACGACACGACACGACCAAGCTACACAAATTTGAACATGAATATTCAGGAGGAGACTAAGCTGACTCTTGCTCTTCCTGGTTCTACCAAATCAACTACACCTGCTTCTGCAGCCACAAAACGTGCCTTCTCCACTACACTTGATCTTCATCTTGGCACCAAACATGTGGTGGGATGGCCACCGGTGAGAGGAAACAGAAAGAAAATTGCTATAAAAACTTGCAAGTACGTCAAAGTTGCGGTTGATGGAGCTCCGTATCTAAGAAAAGTCGATCTCGAAATTTATGACGGTTATGACCATCTTGTCAGAGCATTGGATACCATGTTTGTCAGTACTAAGTCTAATTTGATGAATGACAAGAAATACATGCTTACCTATGAGGACAGAGATGGTGACTGGATGTTGCTTGGAGATGTACCCTGGAAAATGTTTGTTGACTCATGCAAGAGAATAAGGCTTATGATTAGCATGGAGGATACTACTAGTTGCAGTTCCAGATGTACGGGGTCCAGTGAGAAGGATAATTAG 630 0.4365 MPRVKLYLVHDARRPQTSYYKARTLVNKQTSVWSHDTTRPSYTNLNMNIQEETKLTLALPGSTKSTTPASAATKRAFSTTLDLHLGTKHVVGWPPVRGNRKKIAIKTCKYVKVAVDGAPYLRKVDLEIYDGYDHLVRALDTMFVSTKSNLMNDKKYMLTYEDRDGDWMLLGDVPWKMFVDSCKRIRLMISMEDTTSCSSRCTGSSEKDN* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6886 209 Gene3D - 103 201 - -
Psa5g6886 209 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 40 193 IPR003311 GO:0005634|GO:0006355
Psa5g6886 209 Pfam AUX/IAA family 69 193 IPR033389 -
Psa5g6886 209 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 40 193 - -
Psa5g6886 209 SUPERFAMILY CAD & PB1 domains 100 189 - -
Psa5g6886 209 ProSiteProfiles PB1 domain profile. 108 194 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6886 Psa-Chr5 566813245 566814778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6886 95 185 B3 DNA Binding Superfamily AT4G23980 33.684 4.01e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa5g6886 AUX_IAA 1.6e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6886 K14484 - gmx:100500488 174.096