Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6880 ATGGTTATGAATTGCAACAGAGTAGAACACTTTGAAGAATCCACCATGAAAATCCAAACTGAAATTCCAATTCATCAAGTTCGTTTACCTCCACAACGAACTTCACTCCACAAACTCAAACAAAGACTCTCTGAAATCTTCTTCCCTGATGATCCTTTACACCGTTTCAAAAACCAACCCTCCTTCACCAAGTTTCTTCTTACTCTCCAATTCTTGTTCCCCATTTTTCAATGGGGCTCTCAGTACAATCTCAAACTCCTCCGTTCCGACATCGTCTCCGGCCTCACCATTGCCAGCCTCTCCATTCCTCAGGGGATAAGTTACGCGAAGTTAGCAAACTTGCCACCTATTATTGGATTATATTCAAGTTTTGTGCCACCATTGATATATGCTTTGCTTGGAAGTTCAAGACATGTTGGTGTTGGACCAGTTTCAATTGCATCATTAGTAATGGGATCAATGTTGAGCGAAAGTGTTTCTTTCACAAAAGATCCTACTCTTTATCTTCAATTGGCTTTCACTGCAACTTTTGTTGCTGGTTTATTCCAATCCTCCCTTGGCATATTAAGGTTAGGTTTTGTAATTGATTTTCTATCAAAGGCAACATTGGTTGGTTTCATGGCTGGTGCTGCTATCATTGTTTCATTGCAGCAATTGAAAGGGTTACTTGGAATTGTGCATTTTACCAATAAGATGCAAATTATTCCTGTATTGCTCTCTGTTTACAATCAAAAAAATGAGTGGTCATGGCAAACTATTGTTATGGGATTTGGTTTCTTAGCATTCCTTCTCACAACAAGACACATTAGTTTGAGGAAACCAAAGCTCTTCTGGGCTTCAGCAGCTGCTCCTTTAACATCAGTCATTCTGTCAACAATTTTAGTCTTTCTTCTCAGAAATAAAACTCATCAAATTTCAGTGATTGGACACTTATCAAAGGGTGTTAATCCACCATCAGCAAACCTGTTATACTTCAATGGTCCTTACTTGGCTCTTGCTATCAAAACAGGCATTGTCACTGGGATTCTATCTCTCACAGAAGGAATTGCGGTCGGTAGAACATTTGCAGCACTTAAGAATTACCAAGTGGATGGAAACAAAGAGATGATGGCTATTGGTATCATGAACATAGCTGGTTCTTGTACTTCATGCTATGTCACGACAGGATCGTTTTCTCGAACGGCTGTTAACTACAATGCTGGAGCACAGACTGCAGTTTCTAATATAATCATGGCTTCGGCTGTTCTAGTGACCCTTTTGTTTCTCATGCCGCTCTTTTACTATACGCCAAATGTTGTCTTAGCGACCATCATCATCGCCGCGGTGATTGGACTGATAGATTATCAAGCTGCATATAAACTCTGGAAGGTTGATAAACTTGATTTCTTGGCCTGCATGTGCTCCTTTTTCGGTGTTCTCTTCCTTTCTGTACCGTTAGGCCTCAGTATAGCGGTTGCGATATCAGTTTTCAAGATCCTACTTCATGTCTCGAGACCAAACACTTTGGTTTTGGGGAACATACCAGGAACACAAATATTCCATAACATAAACCAATACAAAGAAGCTTTAAGAGTTCCTTCATTTCTCATTTTGGCTGTTGAGTCTCCAATCTATTTCGCGAATTCAACTTACCTGCGAGAGAGGATACTGAGATGGGTTCGAGAAGAGGAAGAACGCATAAAAGAAAATAACGGAAATGCGTTGAAGTGCATAATTTTAGACATGACAGCTGTCACAGCAATAGACACAAGTGGACTCGAAACTTTAGGCGAACTTAGAAAGATGCTGGAAAAGAGATCACTTCAGTTTGTGCTGGTAAATCCGGTTGGAAATGTGATGGAAAAGTTACATATGTCGAAGGTTTTGGATACCTTTGGATTTAAAGGAGTATATCTCACAGTAGGAGAAGCTTTGGCTGACATTTCAACATCAGAGAAAGCGGAACCTTGA 1950 0.4015 MVMNCNRVEHFEESTMKIQTEIPIHQVRLPPQRTSLHKLKQRLSEIFFPDDPLHRFKNQPSFTKFLLTLQFLFPIFQWGSQYNLKLLRSDIVSGLTIASLSIPQGISYAKLANLPPIIGLYSSFVPPLIYALLGSSRHVGVGPVSIASLVMGSMLSESVSFTKDPTLYLQLAFTATFVAGLFQSSLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQIIPVLLSVYNQKNEWSWQTIVMGFGFLAFLLTTRHISLRKPKLFWASAAAPLTSVILSTILVFLLRNKTHQISVIGHLSKGVNPPSANLLYFNGPYLALAIKTGIVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGIMNIAGSCTSCYVTTGSFSRTAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLATIIIAAVIGLIDYQAAYKLWKVDKLDFLACMCSFFGVLFLSVPLGLSIAVAISVFKILLHVSRPNTLVLGNIPGTQIFHNINQYKEALRVPSFLILAVESPIYFANSTYLRERILRWVREEEERIKENNGNALKCIILDMTAVTAIDTSGLETLGELRKMLEKRSLQFVLVNPVGNVMEKLHMSKVLDTFGFKGVYLTVGEALADISTSEKAEP* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6880 649 ProSitePatterns SLC26A transporters signature. 116 137 IPR018045 GO:0008271|GO:0008272
Psa5g6880 649 Gene3D STAS domain 498 644 IPR036513 -
Psa5g6880 649 Pfam Sulfate permease family 87 467 IPR011547 GO:0016021
Psa5g6880 649 PANTHER SLC26A/SULP TRANSPORTER-RELATED 20 649 - -
Psa5g6880 649 CDD STAS_SulP_like_sulfate_transporter 519 634 - -
Psa5g6880 649 TIGRFAM sulP: sulfate permease 74 637 IPR001902 GO:0015301|GO:0016020|GO:0055085
Psa5g6880 649 PANTHER SULFATE TRANSPORTER 20 649 IPR001902 GO:0015301|GO:0016020|GO:0055085
Psa5g6880 649 SUPERFAMILY SpoIIaa-like 524 640 IPR036513 -
Psa5g6880 649 Pfam STAS domain 519 637 IPR002645 -
Psa5g6880 649 ProSiteProfiles STAS domain profile. 518 641 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6880 Psa-Chr5 566243580 566247445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6880 1 648 Inorganic Solute Cotransporters AT3G15990 75.385 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6880 K17471 - gmx:100812617 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6880 5 566243580 566247445 Psa5g6880 5 566243580 566247445 ECH
Psa5g6880 5 566243580 566247445 Psa7g5790 7 483323442 483329886 PCT