Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6878 ATGGATGACATTGAGAATGATGCAATTGCTAGGTATCCCCCTAACCCCTATGCTGTTAGTCACCCTCATAATCAAGGTTATGGTTATCAGAAACATCCTTTTAGGAATTCTCATTCCCATCCAGTTGTAAATGAATCTGTCGAAGATTTTAACGGTGGTGGTGATGAAGAAGATGAATACAGGTTAGGAGGGAAAGATGATGATGAGGATGACGTTGGTCAAAATAGGAGCGCTCGAGTTCCCATGACTCATGTTGATGAAGATGATGACATGGATGGGGATGGCGATGAAAATGATGATAATGACCAACAACAGAGTGAGGAGTATGGTTATCTGAAACATCCTATGAGGAATTCTCCATATTCCCGGCCATTTGACAATGAAGGTAACAATGATGGGGATGATGAAGATGAAGAGCCGTTAGTGGGGGAAGATGAAGGTGATGGTGATGATGATGTTGATCAAAATAACACCTTTCAGCTTTCCCTAAATCACGCCGATGCAGAAGATAACAATGATGGGGATGGGGATAGGGATGAAGAAGATAACATTGATGGGAACGCAGATGGGGATGGGGATAGGGATAGGGATGAAGAAGATAACGTTGATGGGAATGGGGATGGGGATCGGGATCGGGATAGGGATGAAAATGGTGATAATGACAATAAGCAGAAAAGTTATGCCATGATGAATGAAGATGAATTTGAGTGGCAGCCAAAAAAGCAAAAGCTAAAGAGTTTGATGTCAACCTATGAATTTGCAGCTCGGGTGCCAGAACCATCTGCTGCAGCTTCTTCAGCTACTAAACCATCTTTTGGTGCTAGAAATTCGCTTAGTGAATGGACCGAGAAAGAGACATTTGTTCTTCTTGATGCATGGGGTGATCGGTTTCTTCAACATGGAAGGAAGAGTCTTCGATCTGATGAATGGCAACAAGTTGCAGAAAAGGTATCAGAAGTTTCAAAAGTTTATAGGACAGATACTCAGTGTAGAAATCGTTTGGATACATTGAAGAAAAAATACAAAAAGGACAAGATTAAGTTTTCAGAAATGGGTGGTGGAGATAGAAAATGGGTTTACTTCAAAAAGATGGATAAGTTAATGTCTTCTCCACCGCAACAAGCAGGTTTCTCTTGTGGTTTGGACTCGAGAGAAAGTGTTTTAATGAAGCCTAGAGTTTTTGTTAATCATGCAAATGGGTTGGATGACACGAGGGATAATCCCGTGAATACTGAATTCATTGGTGTAGAAGGTTTAGAAAGGCCTCGCGCAAAGAAAAGAAGGAAAGGTAGGGGCAGTGACGAGGCTTCTTCCTTCAAATTACTTGCTGATTCCATTCAGAATTTCAGTAAGATATATGAGAAAATTGAAAATAATAAAAGGCAGCAGATAATGGAGCTGGAAAAGATGAGGATGGATTTCCTCACTGAATTGGAAACACAAAAGAGACAGATTTTTGAAAGATTGCAGAGTGAGATTTCAAAACTTGAGCAAAGAGATGATTAA 1506 0.405 MDDIENDAIARYPPNPYAVSHPHNQGYGYQKHPFRNSHSHPVVNESVEDFNGGGDEEDEYRLGGKDDDEDDVGQNRSARVPMTHVDEDDDMDGDGDENDDNDQQQSEEYGYLKHPMRNSPYSRPFDNEGNNDGDDEDEEPLVGEDEGDGDDDVDQNNTFQLSLNHADAEDNNDGDGDRDEEDNIDGNADGDGDRDRDEEDNVDGNGDGDRDRDRDENGDNDNKQKSYAMMNEDEFEWQPKKQKLKSLMSTYEFAARVPEPSAAASSATKPSFGARNSLSEWTEKETFVLLDAWGDRFLQHGRKSLRSDEWQQVAEKVSEVSKVYRTDTQCRNRLDTLKKKYKKDKIKFSEMGGGDRKWVYFKKMDKLMSSPPQQAGFSCGLDSRESVLMKPRVFVNHANGLDDTRDNPVNTEFIGVEGLERPRAKKRRKGRGSDEASSFKLLADSIQNFSKIYEKIENNKRQQIMELEKMRMDFLTELETQKRQIFERLQSEISKLEQRDD* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6878 501 MobiDBLite consensus disorder prediction 173 198 - -
Psa5g6878 501 Coils Coil 453 499 - -
Psa5g6878 501 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 183 501 IPR044823 -
Psa5g6878 501 Pfam Myb/SANT-like DNA-binding domain 280 367 IPR044822 -
Psa5g6878 501 MobiDBLite consensus disorder prediction 199 237 - -
Psa5g6878 501 ProSiteProfiles Myb-like domain profile. 279 338 IPR001005 -
Psa5g6878 501 Gene3D - 281 343 - -
Psa5g6878 501 MobiDBLite consensus disorder prediction 130 153 - -
Psa5g6878 501 MobiDBLite consensus disorder prediction 87 104 - -
Psa5g6878 501 PANTHER OS01G0718900 PROTEIN 183 501 - -
Psa5g6878 501 MobiDBLite consensus disorder prediction 56 86 - -
Psa5g6878 501 MobiDBLite consensus disorder prediction 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6878 Psa-Chr5 566190903 566193890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6878 420 499 Trihelix Transcription Factor Family AT3G14180 40.000 7.35e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa5g6878 Myb_DNA-bind_4 2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6878 - - mtr:MTR_2g102227 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6878 5 566190903 566193890 Psa5g6878 5 566190903 566193890 ECH