Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6862 ATGGGTAAGGGAACTGGAAGTTTTGGTAAGAGGAGGAACAAGACCCACACACTCTGTGTGAGGTGCGGCCGCCGCAGTTTCCACCTTCAGAAAAGCCGCTGCTCGGCGTGTGCTTACCCTGCTGCTCGCGTCAGGAAATATAACTGGAGTGTTAAGGCAATCCGCAGAAAGACCACTGGAACTGGTAGGATGAGGTACTTGCGCAATGTGCCTCGCCGATTCAAGAGTGGCTTTAGAGAGGGAACTGAAGCTGCACCAAGGAAGAAGGGAGCTGTCACTGCTTAA 285 0.5298 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRKKGAVTA* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6862 94 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Psa5g6862 94 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Psa5g6862 94 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Psa5g6862 94 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Psa5g6862 94 PANTHER RIBOSOMAL PROTEIN L37 1 93 - -
Psa5g6862 94 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Psa5g6862 94 PANTHER 60S RIBOSOMAL PROTEIN L37 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6862 Psa-Chr5 565584298 565586167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6862 1 94 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 87.234 3.31e-57 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6862 K02922 - gmx:100527725 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6862 5 565584298 565586167 Psa5g6862 5 565584298 565586167 ECH