Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6852 ATGGCTGCAATCTCTGATCAATTCTCTGCCACTTCAGAAGAGAACAACATCAACAACACAGTGGCGATATCAATGAACAAGAAGAATATTATAAAACCTCAATCTTCAAATTCCAAAACCTCAGCTTTCAAGTTCTCCGAGGATGCTTCCGTTTGCGAGTCTAAGTTGAAAGAACATGATTTTATCAACTCTACAAAGAACATGGTGGTGGGTTCATCTTCATCAAGTTTGGCTAATAATGAAAAAAAGTCGTTGAAAATCTTTCAATGCAATTTTTGTAAGAATCAATTTTCGTCTGGAAAAGCTTTAGGAGGACACCAAAATGCTCATAAAAAAGAGCGTGCCCTCGCAGAACATGGCCAAGAGGTAAACAATGGTTTTGAGTCTCATCATGATTTTCCTAACTACACTTACAATCCTAGTCTTCCTACAATTCCTTATCATGGATTTAGATCCTATAATAGAGCACTTGGAATTAATATGAAATCTATGATTCACAAACCAACCCCAAACTATTCGTGGATGTCACCTTCTGCATGGACACCAATGCAAGAGATGAAAACCTATTCTTTTCTTGATGGACTGCAGAATGAGAGTGTTAATGCAAATACTGCAACTCCAACTTTGAAGAATTTGCTTAAGAATTTAGAAGTTGGTATTGGAGAGTCTTCCATAAATATTGCTAATAAGGCAAACTTTGATGAAGAGAATTCAAATATAGTTGGCAGAGGTGATCATGTTAATCATTGTATTAACATGGAAGAAGTTTCTGAAGCTGAGTCGATTGAGTTGGATTTGTCACTTAAACTTTGA 813 0.3616 MAAISDQFSATSEENNINNTVAISMNKKNIIKPQSSNSKTSAFKFSEDASVCESKLKEHDFINSTKNMVVGSSSSSLANNEKKSLKIFQCNFCKNQFSSGKALGGHQNAHKKERALAEHGQEVNNGFESHHDFPNYTYNPSLPTIPYHGFRSYNRALGINMKSMIHKPTPNYSWMSPSAWTPMQEMKTYSFLDGLQNESVNANTATPTLKNLLKNLEVGIGESSINIANKANFDEENSNIVGRGDHVNHCINMEEVSEAESIELDLSLKL* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6852 270 PANTHER ZINC FINGER PROTEIN JAGGED 3 270 IPR045320 GO:0003700
Psa5g6852 270 SUPERFAMILY beta-beta-alpha zinc fingers 86 115 IPR036236 -
Psa5g6852 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Psa5g6852 270 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Psa5g6852 270 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 3 270 - -
Psa5g6852 270 Gene3D Classic Zinc Finger 63 137 - -
Psa5g6852 270 Pfam C2H2-type zinc finger 88 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6852 Psa-Chr5 565287415 565288227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6852 57 169 C2H2 Transcription Factor Family AT5G10970 39.823 7.39e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6852 - - cam:101494832 183.726