Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6850 ATGACAGGAATGCATGCAGAAAATGGCTTGTGTGAAGCAAACAAATATCCAAGAGTGAAGCTTGTTCTCATCCCTCTGCGAGTCCCATCTTGGAAAGGGATCCTCATACAAGTGCTCAACATTCCCACAAAGATTAACAAGGGTACTGTTGAAATCTTTACACCTGTTGAACTCATCAAGAAGGGAGACAAGGTTGGATCTTCTGAAGCTGCATTGCTTGCCAAGTTAGGCATTAGGCCCTTTTCATATGGTCTTGTGGTCCTTTCTGTTTATGATAATGGCTCCGTGTTTAGCCCTGAGGTTTTGGATCTTACTGATGATGACCTTGTTGCCAAGTTTGCTATTGGTATATCAATGGTTACATCATTTTCATTGGCCATCTCATACCCAACATTGTCAGCTGCTCCACACATGTTTGTGAATGCCTACAAGAATGTTCTTGCCATTGCAGTGGCAACAGGATATTCCTACCCCGAGGCTGACGAGGTTAAGGAGTATCTCAAGGATCCAAGTAAGTTTGTTGTAGCTGCTGCTGCTGCTGCCAATATAACTTATGATGAACCTGCTGCTGCCAAGGAGGAGAAGAAGGAGGAGCCTGAAGAAGAATCTTCCAAAGTATCTCGCATTTTGCACATGGACTCCTTGAAAGGACATCATAAATGTCTTGAGAATTTTATCCAAAGCTACCTGTGTGAAGAACAGAAAGAGCTCGTTAAACTTGTTGATGCCAAACTCGGTCAAGAGTATGAACTTGTTGTTACTACTTATGCCGGACTATACCGTTATAGAATTGGTGATATGCTAAAGGTAGCTGGATTCAAGAACAAAGCGCCACAGTTCAACTTTGTATGCAGAAAAACATTGTATTAA 870 0.4218 MTGMHAENGLCEANKYPRVKLVLIPLRVPSWKGILIQVLNIPTKINKGTVEIFTPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTDDDLVAKFAIGISMVTSFSLAISYPTLSAAPHMFVNAYKNVLAIAVATGYSYPEADEVKEYLKDPSKFVVAAAAAANITYDEPAAAKEEKKEEPEEESSKVSRILHMDSLKGHHKCLENFIQSYLCEEQKELVKLVDAKLGQEYELVVTTYAGLYRYRIGDMLKVAGFKNKAPQFNFVCRKTLY* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6850 289 Gene3D - 84 107 IPR043141 -
Psa5g6850 289 Pfam 60s Acidic ribosomal protein 129 203 - -
Psa5g6850 289 Gene3D - 37 83 IPR043164 -
Psa5g6850 289 Pfam GH3 auxin-responsive promoter 232 287 IPR004993 -
Psa5g6850 289 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-LIKE 35 204 - -
Psa5g6850 289 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 35 204 - -
Psa5g6850 289 Pfam Insertion domain in 60S ribosomal protein L10P 36 78 IPR040637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6850 Psa-Chr5 565265313 565266442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6850 35 179 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 81.379 1.17e-80 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6850 K02941 - gmx:100777482 254.988