Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6848 ATGGCTGCAACCTCTGATCAATCCTCTGCCACTTTAGAAAAGAACACCATCAACAACAAAGTGGCAATATCAATGAAGGAGAAGGATATTGTAAAACCTCAACCTTCAAACTCCAAAACCTCAACCTTCAAGCTCTCTGAGGATGCTTCCGTTCGCGGGTCGAAGTTGCAACAACATAATTTTATCAACCCTACAAGGAACATGATGGTGGGTTCATCTTCATCGAGTTTGGCTAATAACAACTTTAACAATGAAAAAAATATTAAGAAAGAGTCTTCAAACAATTTTTCATGCAATTTTTGTGGAAGACGATTTTCTACTCCGCAAGCTTTAGGAGGACATCAAAACGCTCACAAAAAAGAGCGCGCTTTCGCAAAACATCGTCAAGAGGTAAACATTGATTTTGGAATTCCTCGTTATCCTTTTCCTTACTATACTAATTATCCTAGTCTTTCTACGACTCCTTATCATGGATTTGGATCATATAATAGAGAACTTGGAATTAATATGGGGTCTATGATTCACAAGCCAAGGACAAATTATTCATGGACCTTACCTCTTTTTAAGTCATGTTCTACTTCTGTGTGGACACCAAAGCAAGAGATGAGAAACTCTTTTTCTATTGATGGATTGAATAATGAGAGTTTTACGGAAAATAATGGAAATAATGTCACTCCAACTTTGAGAAATATGTTAAATTTAGAAGATGGTGTTGGGGAGTCTTCTATAACAATTGCAGCAAAGTCAAATTCAGCAGAAAAAGTTTCAATTGGCGATAATCATCACATTAACATGGAAGAAGTTTCTGATTCTAAATCTTTTGAGCTTGATTTGTCACTTAAGCTTTAA 849 0.3592 MAATSDQSSATLEKNTINNKVAISMKEKDIVKPQPSNSKTSTFKLSEDASVRGSKLQQHNFINPTRNMMVGSSSSSLANNNFNNEKNIKKESSNNFSCNFCGRRFSTPQALGGHQNAHKKERAFAKHRQEVNIDFGIPRYPFPYYTNYPSLSTTPYHGFGSYNRELGINMGSMIHKPRTNYSWTLPLFKSCSTSVWTPKQEMRNSFSIDGLNNESFTENNGNNVTPTLRNMLNLEDGVGESSITIAAKSNSAEKVSIGDNHHINMEEVSDSKSFELDLSLKL* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6848 282 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Psa5g6848 282 PANTHER ZINC FINGER PROTEIN JAGGED 3 282 IPR045320 GO:0003700
Psa5g6848 282 MobiDBLite consensus disorder prediction 34 56 - -
Psa5g6848 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Psa5g6848 282 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 3 282 - -
Psa5g6848 282 MobiDBLite consensus disorder prediction 25 56 - -
Psa5g6848 282 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
Psa5g6848 282 Gene3D Classic Zinc Finger 71 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6848 Psa-Chr5 565203428 565204276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6848 96 177 C2H2 Transcription Factor Family AT1G80730 42.529 4.25e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g6848 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6848 - - cam:101494832 228.409