Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6847 ATGTGTCCTGCAGACATGTCCAACAATCCTCCTCCTGCCAAAAACTTCTTCCCCTCTCCTGCTCTCTCTCTTAGTCTCGCGGGTATTTTTCGCCATGGTGGTGCTGCGGTGGAGGGCGAAGGTGCGACTACGAGTAACATGGAGGTGGAGGAAGGGGAGGAAGGGAGTACTATAGGCGGCGGCGGCGGCGAACGCGTGGAGGAAATTAGCAGTGAGTATTCAGGTCCATCAAAATCCAAATCAGAGGAAGATTTTGACGGAGATGAACATGAAGATGATGAGGAAGAAGATGAAGGTGGTGATGGAGACAATAAGAACAAGAAGAAGAAAAGGAAGAAATATCACAGACACACTGCTGAACAGATCAGATTCATGGAAGCGCTTTTCAAAGAATCACCACACCCTGATGAAAAACAGAGACAACATCTTAGCAAGCAATTAGGACTTGCTCCAAGACAAGTCAAGTTTTGGTTCCAAAATCGTAGAACTCAAATTAAGGCAATACAAGAGAGACATGAAAATTCATTGTTGAAAACAGAAATAGAGAAACTAAGGGACAAAAACAAGACCCTAAGAGAGACCATAAACAAAGCTTGTTGCCCCAATTGTGGGGTACCTACCACAAACAGAGATGGTTCCATGCCAACTGAAGAACAACAACTTCGTATTGAAAATGCCAAACTCAAATCCGAGGTAGAGAAACTTCGAGCCGCGTTAGGGAAATATGCATCTGGAACAATGTCACCTTCATGTTCTACTAGCCATGATCAAGAGAATATAAAAAGTTCTTTGGATTTTTATACTGGAATTTTTGGTCTTGATGAGTCAAGGATAATGGATGTGGTGAACCAAGCAATGGAAGAGCTGATTAAGATGGCTACAACGGGGGAACCATTGTGGCTACGTAGCTTTGAGACCGGTCGTGAAATATTGAACTATGATGAATATCTGAAGGAGTTTGGAGGTGAAAATTCGGACAATGATAGGCCAAAGAGATCCATTGAAGCTTCAAGAGATACAGGAGTTGTTTTTGCAGATCTTCATAGCATTGTCCAATGTTTTCTTGATGCTAATCAATGGAAGGAAATGTTTCCATGTTTAATATCTAAGGCTGCAACCGTAGATATTATTTGCAAAGGAGAAGGTTCTAACAAGAATGGTGTTGCGCAACTGATGTTTGCTGAGCTGCAAATGCTAACACCAATGGTGGCCACTAGAGAAGTGTATTTTGTCAGATACTGCAAACAATTAAGTGGTGAAAAATGGGCAATTGTTGATGTGTCCATAGACAAAGTAGAAGACAACATTGATATGTCTCTCATGAAATGCAGAAAACGTCCATCTGGTTGCATTATTGAAGATAAGTCAAATGGTCATTGCAAAGTAACATGGGTGGAGCATTTAGAGTGTCAAAGGAGCACAGTTCATTCAATGTTTAGAACCATCGTCAACAGTGGCCTAGCCTTTGGGGCAAAGCATTGGATTGCGACGTTTCAACTTCAATGCGAACGACTAGTTTTCTTCATGGCAACAAATGTCCCCATGAAGGATTCAACTGGTGTTGCTACATTGGCTGGAAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGTCAAGCTGTTAGTGCATCAAGCTTCCATACATGGACCAAAGTTACTAGTAAAACTGGAGAAGACATAAGGATTAGTTCTCGAAAGAATTTGAATGATCCCGGTGAACCTCTAGGGTTGATCCTTTGCGCAGTTTCTTCTGTATGGTTACCTGTATATCATAATGTTCTGTTTGATTTCTTGAGGGACGAAGCTCGTCGAACTGAGTGGGATATCATGTCTAGTGGCGGAGCAGTGCAGACAATTGCAAATTTAGCCAAAGGACAAGACAGAGGCAATGCAGTAACAATCCAAACGATTAAATCTAAAGAGAACAATATGTGGATACTGCAAGATAGCTGCACAAACTCTTATGAATCAATGGTGGTATATGCTCCTGTGGACATTGCTGGTATTCAGTCTGTGATGACAGGATGCGACTCGAGCAATCTTGCCATACTTCCATCAGGATTCTCAATTGTTCCCGATGGCTTAGAGTCGAGGCCAATGGTAATTACTTCGAGGCGGGAGGAGAAAAACATAGAGGGAGGATCTTTGTTTACAATAGCATTCCAGATTCTTACCAATGCTTCTCCAACAGCCAAATTAACAATGGAGTCTGTGGACTCTGTTAACTCTCTTGTATCATGTACATTGAAACATATCAGAACAAGTTTACATTGTGAAGATGGTTAA 2298 0.4173 MCPADMSNNPPPAKNFFPSPALSLSLAGIFRHGGAAVEGEGATTSNMEVEEGEEGSTIGGGGGERVEEISSEYSGPSKSKSEEDFDGDEHEDDEEEDEGGDGDNKNKKKKRKKYHRHTAEQIRFMEALFKESPHPDEKQRQHLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLRDKNKTLRETINKACCPNCGVPTTNRDGSMPTEEQQLRIENAKLKSEVEKLRAALGKYASGTMSPSCSTSHDQENIKSSLDFYTGIFGLDESRIMDVVNQAMEELIKMATTGEPLWLRSFETGREILNYDEYLKEFGGENSDNDRPKRSIEASRDTGVVFADLHSIVQCFLDANQWKEMFPCLISKAATVDIICKGEGSNKNGVAQLMFAELQMLTPMVATREVYFVRYCKQLSGEKWAIVDVSIDKVEDNIDMSLMKCRKRPSGCIIEDKSNGHCKVTWVEHLECQRSTVHSMFRTIVNSGLAFGAKHWIATFQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCQAVSASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVYHNVLFDFLRDEARRTEWDIMSSGGAVQTIANLAKGQDRGNAVTIQTIKSKENNMWILQDSCTNSYESMVVYAPVDIAGIQSVMTGCDSSNLAILPSGFSIVPDGLESRPMVITSRREEKNIEGGSLFTIAFQILTNASPTAKLTMESVDSVNSLVSCTLKHIRTSLHCEDG* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6847 765 CDD START_ArGLABRA2_like 276 503 - -
Psa5g6847 765 SUPERFAMILY Bet v1-like 533 757 - -
Psa5g6847 765 Coils Coil 218 238 - -
Psa5g6847 765 SMART HOX_1 110 172 IPR001356 GO:0003677
Psa5g6847 765 SUPERFAMILY Bet v1-like 274 504 - -
Psa5g6847 765 CDD homeodomain 115 166 IPR001356 GO:0003677
Psa5g6847 765 ProSiteProfiles 'Homeobox' domain profile. 108 168 IPR001356 GO:0003677
Psa5g6847 765 Coils Coil 167 194 - -
Psa5g6847 765 ProSiteProfiles START domain profile. 271 507 IPR002913 GO:0008289
Psa5g6847 765 Gene3D - 97 180 - -
Psa5g6847 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 16 762 - -
Psa5g6847 765 SMART START_1 280 504 IPR002913 GO:0008289
Psa5g6847 765 Pfam Homeodomain 111 166 IPR001356 GO:0003677
Psa5g6847 765 Gene3D - 318 499 IPR023393 -
Psa5g6847 765 MobiDBLite consensus disorder prediction 37 117 - -
Psa5g6847 765 SUPERFAMILY Homeodomain-like 101 169 IPR009057 -
Psa5g6847 765 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981|GO:0006355
Psa5g6847 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 762 IPR042160 -
Psa5g6847 765 MobiDBLite consensus disorder prediction 86 100 - -
Psa5g6847 765 Pfam START domain 282 504 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6847 Psa-Chr5 565175890 565180773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6847 69 764 Homeobox Transcription Factor Family AT1G79840 64.957 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa5g6847 START 3.8e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6847 K09338 - gmx:100808292 1204.5