Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6838 ATGTTGCCACATTACCGAACTAAAAACCCTTCCTCTCTCAGCCTCTCATTTCCTCTCGTTCAACCCTTCCTCTCTCGCCTCTCATTTCCTCTCGTTCATAACCAAAATGGTGAAGAGAAGCAAGAAGTAAGAGTTAAGAGGGGTTCCATTGAAGAAGAAGTACAAAATCTGAAGAAAGTGAAAGAGCATAACAAGAAGAAAACCAAAGAGGCTAAGAAGCTTCTTCAAAGAGAAGAAGCTCGTAGAGAAAAGGCTATTCAGGAATTGGAACAAAAGAAAGCAGATCGGAAAGAAAGGGCTCGTAAAAGGAAGTTGGGCTTGCCGGAGGATGATGATAACTCTAAATCAGTTGAAACAGCTTCTCTAGAAAATGTTGCCACTGCTGCGAAGACTAAAGTAGATAGTTCGGATAGGGCCTTTTACAAGGATTTGGTAAAGGTTATTGAAGCCTCTGATGTCATACTTGAGGTCCTTGATGCCAGAGATCCCTTAGGTACTCGCTGTGTTGACATAGAAAAGATGGTGATGAAAGCAGGACCTGAGAAACGACTTGTGTTGCTTTTGAATAAAATTGATCTTGTTCCTCGAGAATCTGTCGAGAAGTGGCTTAAGTACCTTCGAGAAGAATTACCTACTGTCGCTTTCAAGTGCAGTACACAACAGCAACGATCAAACCTAGGGTGGAAATCTTCTAAAAAAGTCAAACCAAGTAATACTTTGCAATTGAGTGATTGTCTCGGAGCGGAGACACTTCTCAAACTATTGAAGAATTATTCAAGAAGTTACGAGATCAAGAAGTCAATCACTGTTGGTTTGGTTGGACTTCCCAATGTTGGTAAGAGTAGTCTTATTAACAGTTTAAAGAGATGCCATGTTGTCAATGTCGGTGCTACTCCTGGGTTAACAAGGTCAATGCAAGAGATTCATTTGGACAAAAATGTTAAGCTGCTGGATTGCCCTGGTGTTGTTATGCTGAAGTCTCAAGGAAATAATGCTACTATTGCATTAAAAAATTGTAAGAGAATCGAAAAGTTAGAGGATCCAATTGGCCCAGTGAAAGAAATTCTCAAGCTCTGTCCTGCCAGGGTGCTGGTAGCTCTTTACAAGATTCCAAAATCTGCTGCAAGAATCGTACTTCATGATTGGAATGAAGGTAAAATACCATATTATACTATGCCCCCAGTTAGTGAAGCAGAACCTTCAGAGGCCAAGATAGTTCCAGAGTTTTCTAAAGATTTTAACATTGATGAAGTCTACAACGGTGAAACTTCTTTTATTGGTACCCTTAAATCGACTATTGACTTAGATCCTGTTGAAGTTCCTTCAAGTTGCCCTCTCAACTTTGATGAGACAATGTTAGAGGATAATGAACATGTTACTTTGCCAAAACAAGATGAAGCTCCTGAGAAAGTGGCTGACAATGATGAGGATGAATCCATGGAATCTGATAAAGATGATGTTAGCAAGAACAAGGGTAAAACAGCAAGTAGTAAACAAAATGAGAAGTTATACACAGCAGATGGTATACTTAATCCAAAATTGAAGCGGGCAGAGAAGAAGAAAAAGAAGAAGGCTAACAAAGCCGGTTCATCTGATCCCATGGATGGTGATTATGACTTCAAAGTTGATTACTTCAAAAAAGACACAATGGATGTTGAAGGTGGCAGCGGTGATGACGGCAATGATCGTCATGATGAACAAGTTAACTCTGAGGTTCCCATGTCTGGCGTTGAGGATCAGGCCTGTTCTACCGTTAGTATAAGATGGACAGGTGATCCGGAGAAAGGAACAGTTTGCGAAATGTATGCCACAAATTTGGTGTTGATGAGTCCAAGATACCCTATCCGAGCTATGAAGTTTTCTGTCTCTCCTGTTGTGCGTGTTGCTGTTCAGTGCAAGGTTGCTTCAGATCTTCCTAAGCTAGTTGAGGGTCTCAAACGTTTGGCTAAGTCAGATCCTATGGATGATTTCATGGGTGGAGTTGAGATTGTTAAATCCGACCCTGTTGTGTCCTTCAGGGAGACTGTTCTAGATAGATCAGTCCGCACAGTGATGAGTAAACCACCCAACAAACACAACCGGTTGTACATATGA 2094 0.4102 MLPHYRTKNPSSLSLSFPLVQPFLSRLSFPLVHNQNGEEKQEVRVKRGSIEEEVQNLKKVKEHNKKKTKEAKKLLQREEARREKAIQELEQKKADRKERARKRKLGLPEDDDNSKSVETASLENVATAAKTKVDSSDRAFYKDLVKVIEASDVILEVLDARDPLGTRCVDIEKMVMKAGPEKRLVLLLNKIDLVPRESVEKWLKYLREELPTVAFKCSTQQQRSNLGWKSSKKVKPSNTLQLSDCLGAETLLKLLKNYSRSYEIKKSITVGLVGLPNVGKSSLINSLKRCHVVNVGATPGLTRSMQEIHLDKNVKLLDCPGVVMLKSQGNNATIALKNCKRIEKLEDPIGPVKEILKLCPARVLVALYKIPKSAARIVLHDWNEGKIPYYTMPPVSEAEPSEAKIVPEFSKDFNIDEVYNGETSFIGTLKSTIDLDPVEVPSSCPLNFDETMLEDNEHVTLPKQDEAPEKVADNDEDESMESDKDDVSKNKGKTASSKQNEKLYTADGILNPKLKRAEKKKKKKANKAGSSDPMDGDYDFKVDYFKKDTMDVEGGSGDDGNDRHDEQVNSEVPMSGVEDQACSTVSIRWTGDPEKGTVCEMYATNLVLMSPRYPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMDDFMGGVEIVKSDPVVSFRETVLDRSVRTVMSKPPNKHNRLYI* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6838 697 MobiDBLite consensus disorder prediction 459 532 - -
Psa5g6838 697 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN-LIKE NSN1 77 372 - -
Psa5g6838 697 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN-LIKE NSN1 373 556 - -
Psa5g6838 697 Gene3D Elongation Factor G (Translational Gtpase), domain 3 622 686 - -
Psa5g6838 697 PRINTS GTP1/OBG GTP-binding protein family signature 270 290 IPR006073 GO:0005525
Psa5g6838 697 PRINTS GTP1/OBG GTP-binding protein family signature 316 331 IPR006073 GO:0005525
Psa5g6838 697 Coils Coil 40 102 - -
Psa5g6838 697 MobiDBLite consensus disorder prediction 88 117 - -
Psa5g6838 697 Gene3D - 141 325 IPR027417 -
Psa5g6838 697 CDD Nucleostemin_like 152 322 - -
Psa5g6838 697 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 141 325 IPR030378 GO:0005525
Psa5g6838 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 378 IPR027417 -
Psa5g6838 697 Pfam 50S ribosome-binding GTPase 270 332 IPR006073 GO:0005525
Psa5g6838 697 MobiDBLite consensus disorder prediction 88 118 - -
Psa5g6838 697 PANTHER GTP-BINDING PROTEIN-RELATED 373 556 - -
Psa5g6838 697 PANTHER GTP-BINDING PROTEIN-RELATED 77 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6838 Psa-Chr5 564652051 564657015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6838 613 697 Eukaryotic Initiation Factors Gene Family AT1G56070 68.421 7.05e-38 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6838 K14538 - pvy:116136816 655.595