Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6837 ATGATGGCTGGAAACCCTAACTGGTGGAACATGCATCCACAATCTTTGAATATCCCTCAATATATGCTTGGATCTTCTTCAATCCCTTTCAATTCCTTGACAGAAAATGCTGAAGTTAATCCCCAATCATGGAGTCAACTACTTTTTACTGGACTACCTGGAGAAGAAGAGAGGCTTGGTTTCGATCATTTTCAACCTAAAAACACAGAAAACTGGGATGTTCAAATTCTGAATCCATCTTCAAGAGCTCCTTTTATGGATGTGATAAAGCATGAAGCTTCTCAGAGTGAGAATTTCTATAACCAAGGGCATCATGAAGAGTTTAATACTTCTGGACTTGGTTCGTCTTGGTCACACATGGTGCCGGTTTCTTCTCCAAGCTCTCATGTCACTACTAGCTTGAGTAGTGATAATATATTGGATTTCACTTATAACAAGCTAGATCATAGCAAAAACCAACTACCAGATCAAATATCTGAGTGTAATAGTTCAACTGTTGGAGTTAATAAGAAGGCTAGGGTTCAGCCATCTTCAAGCCAACCACCTCTAAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAACTAGTTTCTCCATTTGGAAAGACTGACACAGCTTCTGTATTATTAGAAGCCATTGGATACATCAGATTTCTGCAGAGTCAAATTGAGGCACTAAGCTCTCCTTACTTGGACACTGCAGCTTCAAAAAACATCATGAGGAATCAACATTCTGTGCATGTTGAAAGAAATTCTGTGTTTCCTGAGGACCCTGGTCAGCTGTTGGATGACACTGGCCTAAAAAGAAAGGGTGCTCCAATTCCAAACGAGAATGTAGAAGGTAATAAGGCAAAGGACTTGAGGAGTAGAGGGTTGTGTTTGGTTCCAATTTCATGCACACAACATGTTGGAAGTGAAAATGGAGCTGATTATTGGGCACCAGCATTTGGAAGTGGATTTTAA 975 0.4041 MMAGNPNWWNMHPQSLNIPQYMLGSSSIPFNSLTENAEVNPQSWSQLLFTGLPGEEERLGFDHFQPKNTENWDVQILNPSSRAPFMDVIKHEASQSENFYNQGHHEEFNTSGLGSSWSHMVPVSSPSSHVTTSLSSDNILDFTYNKLDHSKNQLPDQISECNSSTVGVNKKARVQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLDTAASKNIMRNQHSVHVERNSVFPEDPGQLLDDTGLKRKGAPIPNENVEGNKAKDLRSRGLCLVPISCTQHVGSENGADYWAPAFGSGF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6837 324 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 311 - -
Psa5g6837 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Psa5g6837 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 235 IPR036638 GO:0046983
Psa5g6837 324 Gene3D - 184 247 IPR036638 GO:0046983
Psa5g6837 324 PANTHER OS05G0228400 PROTEIN 19 311 - -
Psa5g6837 324 CDD bHLH_AtbHLH_like 184 231 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6837 Psa-Chr5 564576273 564579411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6837 1 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 39.640 8.92e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6837 - - gmx:100802121 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6837 5 564576273 564579411 Psa5g6837 5 564576273 564579411 ECH