Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6836 ATGTCTACACCATTACAACATGATGATGAAACTTCATCTCTCAACTTCAAGGAGACAGAACTCAGACTAGGCCTACCTGGTTCTCAATCTCCTCACAGAAAACAAGTTGGAGAAGTTTCTCATAACTTCAACAAAAACATTAATGTTTCTTCTTCTTTGAACAACCTTGTATGTAGTGTTGGAGCTAAAAGAGGTTTCTTTAATGCTATTGATCAATCTTCCCCAAAAAACATCAAAGATGTTCTTCACCAACCACTACATGAAAAGAATAAACATGTTTCAGGAACAAATGAACATGCGAATGCTCTTGTTTCAAAGACACAGGTTGTAGGATGGCCGCCAATTCGATCTTTTCGAAAGAACTCGATGGCGTCGAATTCGACAAAGAACAATGAGGAAGATGAAGGAAAACCAGGATTTGGTTGTCTCTATGTAAAAGTGAGTATGGATGGTGCACCTTATCTCAGAAAGATTGATCTCAAAATCTATAACAACTATAAGGATCTTTCTTCAGCTCTTGAGAACATGTTCACATGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTGAGTGAAAGCTCTTTGAGGGATCTTCTACATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGTGATTGGATGCTTGTCGGCGATGTTCCTTGGCGGATGTTCGCCGACTCGTGTCGGAGACTAAGGATCATGAAAGGTTCTGAGGCAATTGGGCTAGCTCCAAGAGCCATGGAAAAATCTAGGAGCCAAAAGTAA 789 0.3992 MSTPLQHDDETSSLNFKETELRLGLPGSQSPHRKQVGEVSHNFNKNINVSSSLNNLVCSVGAKRGFFNAIDQSSPKNIKDVLHQPLHEKNKHVSGTNEHANALVSKTQVVGWPPIRSFRKNSMASNSTKNNEEDEGKPGFGCLYVKVSMDGAPYLRKIDLKIYNNYKDLSSALENMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWRMFADSCRRLRIMKGSEAIGLAPRAMEKSRSQK* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6836 262 ProSiteProfiles PB1 domain profile. 142 244 IPR000270 GO:0005515
Psa5g6836 262 PANTHER AUXIN-RESPONSIVE PROTEIN 86 254 - -
Psa5g6836 262 PANTHER AUXIN-RESPONSIVE PROTEIN 8 81 - -
Psa5g6836 262 Pfam AUX/IAA family 18 253 IPR033389 -
Psa5g6836 262 Gene3D - 139 256 - -
Psa5g6836 262 SUPERFAMILY CAD & PB1 domains 142 243 - -
Psa5g6836 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 86 254 IPR003311 GO:0005634|GO:0006355
Psa5g6836 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 81 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6836 Psa-Chr5 564333964 564335788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6836 144 256 B3 DNA Binding Superfamily AT1G19850 31.304 1.09e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa5g6836 AUX_IAA 1.3e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6836 K14484 - gmx:100804423 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6836 5 564333964 564335788 Psa5g6836 5 564333964 564335788 ECH