Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6827 ATGTCTTGCAAGGATAAAGGTGGATTAGACAATGGAAAATACGTTCGCTATACACCTGAACAAGTTGAAGCTCTTGAGAGGCTTTATCATGATTGTCCTAAACCTAGTAGCATTCGTCGCCAACAGCTTATTCGGGAGTGCCCTATTCTCTCTCATATTGAGCCTAAACAGATTAAAGTTTGGTTTCAAAATAGAAGATGTAGGGAGAAGCAGAGAAAAGAGGCTTCACGTTTGCAAGCTGTTAATAGGAAGTTGAGTGCCATGAATAAGCTGCTTATGGAAGAGAATGATAGGTTGCAGAAACAAGTGTCTCATTTGGTGTATGAAAATGGCTACTTTCGCCAACATACCCAAAATACTACACTTGCAACCAAAGATACAAGCTGTGAATCGGCGGTGACTAGTGGTCAACGCAGTTTGACAGCCCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAGGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGAATCTATTGGAATCATTGCCATTTCTCATGGTTGCCCTGGTGTGGCAGCTAGAGCATGTGGCCTAGTGGGTCTAGAACCTACACGGGTTGCAGAAATCCTTAAAGATCGGCCCTCGTGGTATCGTGATTGCCGAGCTGTGGATATTCTGAATGTGCTCCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTACATGCAGCTATATGCGCCAACCACATTGGCTCCTGCACGAGACTTATGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATATGTGAGAGGTCTCTTAAAAACACACAGAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCTGAGATGCTGCCCAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGCGTTCCCGAGGTACTGCGTCCACTGTATGAATCATCAACGATGCTGGCTCAGAAGACAACAATGGTGGCCCTACGTCACCTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGCAGACGACCAGCCGCACTTCGAGCACTTGGCCAAAGACTGAGCCGGGTTTCAATGAGGCACTCAATGGGTTTACAGATGAGGGATGTGAATTCATCACCTAACAAATTAATGGGTCTGAATCTTTCATTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTCCTATGTGCTAAAGCTTCAATGCTATTACAAAATGTACCCCCGGCCATTCTACTGAGGTTTTTGCGGGAACATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATCAAAGTTGGTCCTTGTAGTTTCTCAGGATCTCGAGTTGGAAATTATGGGGGCCAAGTAATTCTTCCACTAGCCCACACTATTGAGCACGAGGAGTTTCTGGAAGTTATTAAATTGGAAGGAATGGCTCATTCTCCCGAAGACACAATAATGCCTAGAGAAGTGTTTCTTTTACAACTCTGCAGTGGAATGGATGAGAATGCTGTGGGTACCTGCGCTGAACTTATATTTGCTCCAATTGATGCATCTTTTGCTGATGATGCTCCCCTTCTGCCTTCTGGATTTCGCATCATTCCTCTTGATTCTGGAAAGGAAGTTGCCAACCCCAATCGCACCCTTGACCTGGCATCTGCCCTTGACATTGGCCCTGCTGGAAACAAAGCTTCAAATGATTATTCTGGAAATTCTGGCTGTATGAGATCAGTGATGACAATAGCATTTGAATTTGCTTTTGAAAGTCATATGCAGGAGCATGTAGCATCTATGGCACGGCAATATGTTCGTAGTATTATATCATCTGTCCAAAGGGTAGCATTAGCACTTTCACCTTCTCATTTGAGTTCACAAGCTGGGCTCAGGACACCACTGGGTACTCCTGAAGCTCAAACACTTGCTCGTTGGATCTCCAACAGTTATAGGTGCTTCTTGGGCGCTGAGCTACTTAAATCTAATAATGAGGGAAGCGAATCTTTGCTCAAGTCCTTGTGGCATCACTCTGATGCAATACTATGCTGCACTCTAAAGGCGTTGCCCGTGTTTACTTTTGCAAACCAAGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCACTACAGGATATAACATTGGAGAAAATATTTGATGATCATGGCCGAAAGATTCTGTGCTCGGAGTTTCCTCAAATCATTCAACAGGGTTTTGGATGCCTTCAAGGTGGTCTATGTCTCTCAAGCATGGGTAGACCTATTTCATATGAAAGAGTAGTAGCATGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2460 0.4496 MSCKDKGGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTTLATKDTSCESAVTSGQRSLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPESIGIIAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDILNVLPTANGGTIELLYMQLYAPTTLAPARDLWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTMLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPAALRALGQRLSRVSMRHSMGLQMRDVNSSPNKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSFSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGMAHSPEDTIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEVANPNRTLDLASALDIGPAGNKASNDYSGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWISNSYRCFLGAELLKSNNEGSESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFGCLQGGLCLSSMGRPISYERVVAWKVLNEEENAHCICFMFVNWSFV* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6827 819 ProSiteProfiles START domain profile. 147 348 IPR002913 GO:0008289
Psa5g6827 819 SMART HOX_1 10 76 IPR001356 GO:0003677
Psa5g6827 819 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 819 - -
Psa5g6827 819 SUPERFAMILY Bet v1-like 156 365 - -
Psa5g6827 819 Pfam START domain 157 365 IPR002913 GO:0008289
Psa5g6827 819 Gene3D - 191 375 IPR023393 -
Psa5g6827 819 ProSiteProfiles 'Homeobox' domain profile. 8 72 IPR001356 GO:0003677
Psa5g6827 819 SUPERFAMILY Homeodomain-like 12 76 IPR009057 -
Psa5g6827 819 Gene3D - 7 79 - -
Psa5g6827 819 CDD bZIP 65 104 - -
Psa5g6827 819 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 819 IPR044830 GO:0003700
Psa5g6827 819 CDD START_ArGLABRA2_like 151 366 - -
Psa5g6827 819 Pfam Homeodomain 13 71 IPR001356 GO:0003677
Psa5g6827 819 CDD homeodomain 13 73 IPR001356 GO:0003677
Psa5g6827 819 Pfam MEKHLA domain 676 818 IPR013978 -
Psa5g6827 819 Coils Coil 68 102 - -
Psa5g6827 819 SMART START_1 156 366 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6827 Psa-Chr5 564078041 564085593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6827 1 771 Homeobox Transcription Factor Family AT1G52150 83.143 0.0 1345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa5g6827 START 2.6e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6827 K09338 - zju:107428556 1499.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6827 5 564078041 564085593 Psa5g6827 5 564078041 564085593 ECH
Psa5g6827 5 564078041 564085593 Psa4g5095 4 441501402 441508600 PCT