Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6809 ATGCGGGTGCTTCGTAGCGGACGCCGACGTCGTCTTGCTCCGGTAAGCCGTGAAAAAACCGAACAAGCGGACAAATACGTGAAGACACGCGCCGCTGTCGCGGCGGCAAAGAAAAACGAGCAGAAGATATCGGTTATCGAGATATCTGAGTCGGATAACGACGTAAGGAAAGAGGAGGAAGAGATGGGCGATGAAAGTGGGGGTTTGAGTGCTAATAAAGGCGTTCCTCAAGAGGATGAGGGAAATACTACTCCTTTTCCTGAAAGGGTTCAAGTAGGAGGTTCGCCTGTGTACAAAGTGGAGAGGAAACTTGGCAAAGGTGGGTTTGGACAGGTTTTCGTTGGTCGTCGAGTTACTGGTGGTAATGATCGCCTTAATGGCCCCGGTGCCACTGAGGTGGCTTTGAAATTTGAACATAGAAATAGTAAAGGCTGTAACTATGGCCCTCCTTATGAATGGCAAGTGTACAACACCCTTGGTGGAAGTCACGGAATACCTAAAGTACATTATAAAGGAAGGCAAGGAGAATATTACGTGATGGTTATGGACATGCTTGGTCCAAGTTTGTGGGATGTGTGGAATACCACAGGCCAGGCGATGTCTGCAGAAATGACTGCTTGTATTGCTGTTGAGTCACTGTCTATCTTAGACAAGATGCATTCAAAGGGATATGTGCATGGAGATGTAAAACCAGAAAACTTTTTACTAGGTCAGCCAGGTACAGCACAAGAGAAGAAATTGTTTCTTGTTGACCTCGGATTAGCCACAAAGTGGAGAGACACGTCCAATGGGCAGCATGTTGAATACGATCAACGCCCTGATATGTTCAGAGGAACTGTTCGATATGCAAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCCCTTGCATACACACTCATTTTTCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGGGAGATAATAAGTCCTATCTTGTTTGCAAAAAGAAGATGGGAACTTCTCCTGAGATGTTATGCTGCTTCTGCCCTGCTCCTTTCAGACATTTTCTTGAGTTTGTAGTGGGCATGAAATTCGACGAAGAACCTAACTATTCCAAGCTAATATCCCTATTTGATAGTATGCTTGGACCAAATCCTGCATTGCGGCCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAGAGGGGAAGATTGAATATCGAAGAAGAAGATGATTCACAGCCCAAGAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATATCAATTTACAATGCAAGAATGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGGAAGATTAGAGCAGCATGTAGAACGGGGAATCGCAGATGGCCTTCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGATTTACAAATCAAGTTTACAAGTTGTCACCTTTATTCTTACACAAGGAATGGATCATGGAACAATGGGAGAAGAATTATTACATTACTTCTATTGCCGGGGTTACAAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGGACACAGTATACACAACAGTCATACAAAGTAAGCGACTCTTTCCCCTTCAAATGGATAAACAAGAAATGGAGAGAAGGTTTTCACGTGACTTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTCATGTCGCGGAATGCTGGATTCAGTGATCAGGTCGTTGAACTCGATTTTCTGTACCCTAGCGAAGGAGTCCATAGAAGATGGGATAATGGTTACAGAATAACAGCAACTGCTGCTACATGGGATCAATCTGCTCTAATATTAAGCAAACCAAGGCGCAGACCTGCCGACGAAACACAAGAAACTCTCCGGACATCCCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCTAAAAACCTTTACCTTGCTTGTCTGTGCTATGGACGTACAGTATGCTGA 1983 0.4428 MRVLRSGRRRRLAPVSREKTEQADKYVKTRAAVAAAKKNEQKISVIEISESDNDVRKEEEEMGDESGGLSANKGVPQEDEGNTTPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRLNGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNTTGQAMSAEMTACIAVESLSILDKMHSKGYVHGDVKPENFLLGQPGTAQEKKLFLVDLGLATKWRDTSNGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSYLVCKKKMGTSPEMLCCFCPAPFRHFLEFVVGMKFDEEPNYSKLISLFDSMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISIYNARMPMKQRYHYNVADGRLEQHVERGIADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPLFLHKEWIMEQWEKNYYITSIAGVTNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGVHRRWDNGYRITATAATWDQSALILSKPRRRPADETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6809 660 SMART serkin_6 98 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6809 660 SUPERFAMILY Protein kinase-like (PK-like) 98 382 IPR011009 -
Psa5g6809 660 MobiDBLite consensus disorder prediction 49 66 - -
Psa5g6809 660 PANTHER CASEIN KINASE-RELATED 57 630 - -
Psa5g6809 660 Gene3D Transferase(Phosphotransferase) domain 1 76 418 - -
Psa5g6809 660 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 57 630 - -
Psa5g6809 660 MobiDBLite consensus disorder prediction 49 84 - -
Psa5g6809 660 ProSitePatterns Protein kinases ATP-binding region signature. 104 136 IPR017441 GO:0005524
Psa5g6809 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Psa5g6809 660 MobiDBLite consensus disorder prediction 1 25 - -
Psa5g6809 660 Pfam Protein kinase domain 98 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6809 660 MobiDBLite consensus disorder prediction 11 25 - -
Psa5g6809 660 ProSiteProfiles Protein kinase domain profile. 98 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6809 660 CDD STKc_CK1 98 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6809 Psa-Chr5 563521032 563528424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6809 174 370 MAP Kinase Kinase Kinase Kinase AT1G53165 22.222 1.84e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Psa5g6809 Pkinase 3.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6809 - - gmx:100819969 1186.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5090 4 441141205 441147383 Psa5g6809 5 563521032 563528424 ECH
Psa5g6809 5 563521032 563528424 Psa5g6809 5 563521032 563528424 ECH