Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6804 ATGACTCGGCGGTGCTCTCACTGCAGCAACAACGGTCATAACTCACGGACATGTCCGTCAAGAGGCGGAGGAGGTGGCGGTGGGGTTAGGCTTTTTGGTGTTAGATTAACGGATGGATCAATTATTAAAAAGAGTGCGAGTATGGGGAACCTAACGCTAGCTAATCATCACCATTGTTCTTCTTCTTCATCGCTTAATCCTGGTTCGATTCTTAATCCCGGTTCACCGTGTTCTGACCCGCCGAACGAACCGGAAGGTTATTTGTCTGATGACGCCGCCAATGTTTCCAGCTTCGCTATCCGCCGCAGCGACAGAAAAAAAGGTGTTCCATGGACTGAAGAAGAGCACCGATTGTTCTTGGTTGGACTCCATAAACTAGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCACGCGCAGAAGTACTTTATCCGGCAAAGTAATGCTACCAGGAGAAAGAGACGTTCGAGTCTTTTCGACATGGCTCCGGATATGTGTCCAGATTCAACTTCAATGCCAGAAGAACAAGTACTACTTCCACCTTCTGAGAACTCACAACAACCTTGTAATGGAAAATCGCAGCCGTCACTAAATCTCTCTCTCAAGACGGAATATGAACCAATGGAAACTACTTCCGAAGAAAACGTAGACGAGGGCAATGAAACTCCAATGGGATCAAAGGGATTGACGCCAATGACTCACGGGTTCTTTCCATCTTATTTACCTGTCTCATTTTCCATATGGCCAACAATTGGAGCTCCCTTTGAAGTATCCAACGGTGGAGACACATCTCATCATAGTCATCATCAGGTTCTCAAGCCGATACCGGTCATTCCTAAGGAACCCGTCAACGTTGATGAACTTGTGGGGATGTCTCATTTGAGCATCGGGGAAACACACGTGCGTGATAGAGAGCCTTCCCCTCTTTCCTTGAAGTTGTTAGGAGAGCCCTCAAGACAATCGGCATTCCACGCAAATGCTCCGGTTGGTGGCTCTGATCTAAACAGTGGCAAAAACAACGCCATTCAAGCGGTTTGA 1074 0.4749 MTRRCSHCSNNGHNSRTCPSRGGGGGGGVRLFGVRLTDGSIIKKSASMGNLTLANHHHCSSSSSLNPGSILNPGSPCSDPPNEPEGYLSDDAANVSSFAIRRSDRKKGVPWTEEEHRLFLVGLHKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDMCPDSTSMPEEQVLLPPSENSQQPCNGKSQPSLNLSLKTEYEPMETTSEENVDEGNETPMGSKGLTPMTHGFFPSYLPVSFSIWPTIGAPFEVSNGGDTSHHSHHQVLKPIPVIPKEPVNVDELVGMSHLSIGETHVRDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLNSGKNNAIQAV* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6804 357 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Psa5g6804 357 SMART sant 107 157 IPR001005 -
Psa5g6804 357 Gene3D - 109 160 - -
Psa5g6804 357 PANTHER OS01G0187900 PROTEIN 1 351 - -
Psa5g6804 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 159 IPR017930 -
Psa5g6804 357 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 106 158 IPR006447 GO:0003677
Psa5g6804 357 MobiDBLite consensus disorder prediction 337 357 - -
Psa5g6804 357 PANTHER TRANSCRIPTION FACTOR KUA1 1 351 - -
Psa5g6804 357 ProSiteProfiles SANT domain profile. 111 159 IPR017884 -
Psa5g6804 357 CDD SANT 110 155 IPR001005 -
Psa5g6804 357 SUPERFAMILY Homeodomain-like 105 160 IPR009057 -
Psa5g6804 357 MobiDBLite consensus disorder prediction 187 210 - -
Psa5g6804 357 MobiDBLite consensus disorder prediction 181 210 - -
Psa5g6804 357 Pfam Myb-like DNA-binding domain 110 155 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6804 Psa-Chr5 563092205 563095835 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g6804 Myb_DNA-binding 6.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6804 - - gmx:778036 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6804 5 563092205 563095835 Psa5g6804 5 563092205 563095835 ECH