Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6793 ATGAATGAAATGTCAAGAAATGAGAGAGAATCTTCAGAAGAAAGAAAGCTAGAACTAAGGCTTGCTCCACCTGGTGTTGAAAACTGGTTTCACACCACCAACAACAACAAACAAAGAGATCTTGATAATCATGACTCTAAACTCTCTCTTGGCAGTAATTACTTTTCAACAAACAATACATCATTTCTTCACTTTCCATCAAACCAACATGTGAGAGGCAAAGAATCTTCATCATCACAAGCCTCTTGTCCTAAGCTAGTAGAGTTACAGAATGGTGATAATAACAAAGTTACAGCTGTTTCCAACACTTCTCAGAAAAGAACTGCTCCTGGGCCAGTAGTAGGTTGGCCACCAATTCGTTCATTCAGGAAAAATCTTGCAACAACAAGCAGCAATTCTAAACCAACATCACAAACTGAATCTCAGACACAACATCACAACAAGGTTGTTGCTGGTAAAAAACCTATTGACAACAACTATGGTAAAGGGCTGTTTGTTAAAATCAACATGGATGGTGTTCCTATTGGTAGAAAAGTTGATCTCAAAGCTTATCATAGCTATGAAAATCTCTCTATAGCTGTGGATGAACTCTTTAGAGGACTCCTTAAAGCTCAAGGAGATTCTTGTGGAAGTAAGAAAAATGAAGATGAAGAAAAAGTGATAAGTGGAATATTGGATGGAAGTGGAGAATATACTCTTGTATATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGCATATGTTTGTATCAACAGTGAAGAGGCTTCGAGTATTGAAGAGTACAGAGCTTTCTGCATTTACACTTGGGACTACTAAGCAAGAGAAGATATGTACTTGA 852 0.3791 MNEMSRNERESSEERKLELRLAPPGVENWFHTTNNNKQRDLDNHDSKLSLGSNYFSTNNTSFLHFPSNQHVRGKESSSSQASCPKLVELQNGDNNKVTAVSNTSQKRTAPGPVVGWPPIRSFRKNLATTSSNSKPTSQTESQTQHHNKVVAGKKPIDNNYGKGLFVKINMDGVPIGRKVDLKAYHSYENLSIAVDELFRGLLKAQGDSCGSKKNEDEEKVISGILDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGTTKQEKICT* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6793 283 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 279 - -
Psa5g6793 283 MobiDBLite consensus disorder prediction 1 20 - -
Psa5g6793 283 Gene3D - 158 277 - -
Psa5g6793 283 Pfam AUX/IAA family 17 269 IPR033389 -
Psa5g6793 283 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 279 IPR003311 GO:0005634|GO:0006355
Psa5g6793 283 MobiDBLite consensus disorder prediction 127 153 - -
Psa5g6793 283 ProSiteProfiles PB1 domain profile. 163 265 IPR000270 GO:0005515
Psa5g6793 283 MobiDBLite consensus disorder prediction 127 148 - -
Psa5g6793 283 SUPERFAMILY CAD & PB1 domains 154 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6793 Psa-Chr5 562469791 562472790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6793 167 274 B3 DNA Binding Superfamily AT4G23980 34.259 2.32e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa5g6793 AUX_IAA 4.1e-70 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6793 K14484 - gmx:100804593 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4547 4 405148997 405150992 Psa5g6793 5 562469791 562472790 ECH
Psa5g6793 5 562469791 562472790 Psa5g6793 5 562469791 562472790 ECH
Psa5g6793 5 562469791 562472790 Psa4g4547 4 405148997 405150992 PCT