Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6792 ATGGGAAAAGCTACGAGATGGTTGAAGGGTTTGTTTGGAATGAAGAAGGAGAAAGAACAAAGTAACAGATCAGGGCCATTGTTTATGGACAAGAAGGAGAAAGGAAACGGTAACAAATCAGGACCGTTGTTTCTAGATAGGAAGGAGAAGAAACAATTACGGAAGGATCATCAGGGTCACATGAATCAAACCGGTTCTTGGTACAGATCCAATGTTGATGAAAAACATAATGATTACAACAAAAAAACATGTTTTTTGAGGTCATTAAGCCATGGCAGCAGTAGAGAATCAGTACTGTTCATAAGCAGGGAGTGGTGGGCTGCTGTAATAATTCAATCTTTGTTCAGAGGCTATTTGGCGCGAAAAGCTCGTCGAGCACTTAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGCTTCCTAGTTAGAAAAAGGGTTGTTGCAACACTTCACAGTATTCAAGCTCTTATGAGAGCTCAAGCAGTTGTTCGGGAGCGACGAGCGCGTAGATCCTTTGATAAGGAGAATGTTCGTCTGTCGCGTATTCGCGGACCAAAACCTGTGCAAATGTATGATGAAACAAGAAATGTACAACATGATCAATGGCTTCGCAATTCTGGCTCAAGTAGATTTAATCCAAATCGAGAGACTCTCGCGATTGATCCTCACAGGACTAGTTCGAGATCTTCAATCTCTGAATATAGAGACGATACGCATCATCACTACTACGAAAAAACATCAACTTCTCTTCCTAGTAATGTATCACGTCGAATTTCAGTTCACGAATGTGAACATTCTCAAGATTTTGATTGGTGTTTCAATAATGTTAATGACGAACATAGATTCTTCACGGCTCATAGTACTCCTCGATTATCAAACTCTTCTCAAGCTAATACTCCGTTGGCGAAGAGTGTTTCTGAAGAAACGAGCTTGTTCTTGCCTTACTCTAATTGTCCTAACTACATGGTGAATACTCATTCATCTAAGGCGAGAGTAGTAAGGTCTCGAAGTGCTCCAAAGCAAAGATCTGAGCTCAAGAAAAGGGTTCCACTTGAGGAAATAATGGCTACAAGAAATAGCATAAGTTCTGTTAAAATGCATTGGTAA 1107 0.4029 MGKATRWLKGLFGMKKEKEQSNRSGPLFMDKKEKGNGNKSGPLFLDRKEKKQLRKDHQGHMNQTGSWYRSNVDEKHNDYNKKTCFLRSLSHGSSRESVLFISREWWAAVIIQSLFRGYLARKARRALKGLVKIQALVRGFLVRKRVVATLHSIQALMRAQAVVRERRARRSFDKENVRLSRIRGPKPVQMYDETRNVQHDQWLRNSGSSRFNPNRETLAIDPHRTSSRSSISEYRDDTHHHYYEKTSTSLPSNVSRRISVHECEHSQDFDWCFNNVNDEHRFFTAHSTPRLSNSSQANTPLAKSVSEETSLFLPYSNCPNYMVNTHSSKARVVRSRSAPKQRSELKKRVPLEEIMATRNSISSVKMHW* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6792 368 ProSiteProfiles IQ motif profile. 107 132 IPR000048 GO:0005515
Psa5g6792 368 Gene3D - 43 129 - -
Psa5g6792 368 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 31 358 - -
Psa5g6792 368 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 38 - -
Psa5g6792 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 147 IPR027417 -
Psa5g6792 368 MobiDBLite consensus disorder prediction 12 45 - -
Psa5g6792 368 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Psa5g6792 368 PANTHER IQ-DOMAIN 5-RELATED 1 38 - -
Psa5g6792 368 PANTHER IQ-DOMAIN 5-RELATED 31 358 - -
Psa5g6792 368 Pfam IQ calmodulin-binding motif 107 122 IPR000048 GO:0005515
Psa5g6792 368 Pfam IQ calmodulin-binding motif 131 145 IPR000048 GO:0005515
Psa5g6792 368 SMART iq_5 103 124 IPR000048 GO:0005515
Psa5g6792 368 SMART iq_5 125 147 IPR000048 GO:0005515
Psa5g6792 368 Pfam Protein of unknown function (DUF4005) 290 362 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6792 Psa-Chr5 562304896 562306679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6792 1 366 IQD Protein Family AT3G16490 36.294 7.93e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6792 - - gmx:100797296 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6792 5 562304896 562306679 Psa5g6792 5 562304896 562306679 ECH
Psa5g6792 5 562304896 562306679 Psa4g4542 4 405062707 405066336 PCT