Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6771 ATGGAAAATCTTAGATGGGATGATGACTCCGAATTTGTTGCCAACATACCAATCTTGTGGAACACTCAACCACAAGATCTTGAAAGAGACTATTCAATGTCCAATCAAACTTCAAGTGTTCTTAGTTATCAAATGCAAGAGACGCAGAAGGTTCAATCAGAAGCTGGAACCAGTTGGGAAGAATCTCTAATATTTCAATCATACCCTTCACTTTCAGTCAATATCAACACACCTAACAATTATGTGCCAGATTTCAACATGGTCCACCAACAAAACAGCAAGAGTACTACTACCTGCTCTCTTGAATCATCACTTGATTGTTTGTTTTCAGCCACTACTAATAGTAACACCGACACGAATTCTGTTCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAACAGAAACTTATGGAACTTCAGTGCGGTTTCTTCTGCGGAATCTGAGAGTACTAATGCATCCATTAGTGCTAGACGAAACAAAGACTTGCAGTATCCATTCAAGGAACTAGATCATGAAATAGTGTCTCAAACTTCCTCAGATCAAGGTAAAATCATTGATAACTCCAAGGTATATTCGACAAAAAGGACTAGTATTGATCGGTATGATCCTTACTTCAGTATTACTACTACTCAGAATTCTTCTTCTGCTTCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCGAAATCGAAGAAACCAAGATGGGATGATGATAATAACAAGTGTCCCAGTTCATCAAATATCAATTTCCAGCAACCGAATTCATCGCTTTCATTGTCGAATTCATCGATTCACGAAGAGCCTGATCCAGAAGCTATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCAGTCATGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAAAGAAAGAATGTTAAGATATCTAAAGATCCACAAACTGTGGCTGCAAGACAAAGAAGGGAGAGAATAAGCGAAAGGATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTCCTTAGATCACAAGTCAAAGCATTAGAGAATCTAGGAAACAAGATTGATACAATGAATAATTGTCCTCCTTCAAGCATAGCCTTCTCCTTCAACCCTTCAATTCCCATGCAAAACCCTAATGACCACATCCAATATTCCTAA 1221 0.3833 MENLRWDDDSEFVANIPILWNTQPQDLERDYSMSNQTSSVLSYQMQETQKVQSEAGTSWEESLIFQSYPSLSVNINTPNNYVPDFNMVHQQNSKSTTTCSLESSLDCLFSATTNSNTDTNSVQDDGISMIFSDCKNRNLWNFSAVSSAESESTNASISARRNKDLQYPFKELDHEIVSQTSSDQGKIIDNSKVYSTKRTSIDRYDPYFSITTTQNSSSASTEFGFKLISEKPPKSKKPRWDDDNNKCPSSSNINFQQPNSSLSLSNSSIHEEPDPEAIAQMKEMIYRAAAFRPVMNLGLEVMEKPKRKNVKISKDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNKIDTMNNCPPSSIAFSFNPSIPMQNPNDHIQYS* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6771 406 MobiDBLite consensus disorder prediction 249 270 - -
Psa5g6771 406 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 398 IPR045843 GO:0003700|GO:0006355
Psa5g6771 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 372 IPR036638 GO:0046983
Psa5g6771 406 Coils Coil 351 371 - -
Psa5g6771 406 Pfam Helix-loop-helix DNA-binding domain 322 361 IPR011598 GO:0046983
Psa5g6771 406 Gene3D - 312 380 IPR036638 GO:0046983
Psa5g6771 406 SMART finulus 318 367 IPR011598 GO:0046983
Psa5g6771 406 MobiDBLite consensus disorder prediction 249 272 - -
Psa5g6771 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
Psa5g6771 406 PANTHER TRANSCRIPTION FACTOR BHLH87 10 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6771 Psa-Chr5 561560554 561562550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6771 67 400 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.020 1.68e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g6771 HLH 5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6771 - - gmx:100778004 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6771 5 561560554 561562550 Psa5g6771 5 561560554 561562550 ECH
Psa5g6771 5 561560554 561562550 Psa4g4509 4 402305001 402307161 PCT