Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6758 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTACTACGAATTATCCTCAACAATACTTTTCTCAACCACAAACTCAAACTCATGATGAGACTCCACCTAAGAAAAGGAGAAACCTTCCTGGCAATCCAGACCCGGAAGCTGAAGTTATAGCTTTATCGCCGAAGACACTTATGGCAACGAATAGATTCATATGTGAGATCTGCAACAAAGGATTTCAAAGAGATCAGAATCTTCAACTTCATAAAAGAGGACACAATTTACCATGGAAGTTGAAGCAGAGAACAGGCAATGAGATAATAAGGAAGAAAGTATATGTATGTCCAGAACCAACTTGTGTGCACCATGACCCATCAAGAGCCTTAGGAGACCTAACTGGTATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAAAAGTGGAAATGTGATAAGTGCTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACCTGTGGTACAAGAGAATATAGATGTGACTGTGGAACCCTCTTCACAAGGAGAGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTAGCAGAAGAGAGTTCAAGAACTGTAATTCATCAACCAAACTCTCACAACATGATCAATCTCCAAACTCAAGAAATACAAGGTTTCACATTAAAGAAAGAGCAACAAAATTTCAGTTTTCTAAAGCCAGAAATTCAAATACCATCTTGGGTTGAATTAGAACAAGATCTAAACCTTCACGAAAACCCTAACCCTAGAAATGGTCCTACACCACTTCCATCCTACCAACCATCATCTGCAGTTTCACCTCACATGTCAGCTACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACCAGCTCATCACAACAACAACAACAATCCATGATCATGATAAGTGGGACCCACCAACATGGTCACGTGTCTCTTGATGACTCTCCCACCACCAACAATAACATGTTAAACTCAAATGGTAATTTTGGTTTGAATTTGTCCTCATGTGAGAACCAAATGATGAACAACTCTTTCTCTTCTTCTGGCTTTCATGGAACAACAACCGCCATTGATGACGGTGGCGGCGGCACCGTTGCCGGAGGAAATGATGCATTTACAAGAGATTTCTTGGGTCTAAGACCTTTATCTGATAGTGATATTCTCAGTATTGCTGGTATGGGAAACTGCATGGACTCTTCAAATTCCCATAATCAACAAAACCAAACTCAAAAACCATGGCAAGGTAATTAG 1260 0.4063 MSNLTSASGEASTTNYPQQYFSQPQTQTHDETPPKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTGNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFTRRDSFITHRAFCDALAEESSRTVIHQPNSHNMINLQTQEIQGFTLKKEQQNFSFLKPEIQIPSWVELEQDLNLHENPNPRNGPTPLPSYQPSSAVSPHMSATALLQKAAQMGSTSSSQQQQQSMIMISGTHQHGHVSLDDSPTTNNNMLNSNGNFGLNLSSCENQMMNNSFSSSGFHGTTTAIDDGGGGTVAGGNDAFTRDFLGLRPLSDSDILSIAGMGNCMDSSNSHNQQNQTQKPWQGN* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6758 419 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Psa5g6758 419 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 4 338 - -
Psa5g6758 419 SMART c2h2final6 141 161 IPR013087 -
Psa5g6758 419 SMART c2h2final6 64 86 IPR013087 -
Psa5g6758 419 SMART c2h2final6 106 136 IPR013087 -
Psa5g6758 419 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Psa5g6758 419 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Psa5g6758 419 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 338 - -
Psa5g6758 419 Gene3D Classic Zinc Finger 119 199 - -
Psa5g6758 419 Gene3D Classic Zinc Finger 60 87 - -
Psa5g6758 419 MobiDBLite consensus disorder prediction 1 45 - -
Psa5g6758 419 MobiDBLite consensus disorder prediction 1 29 - -
Psa5g6758 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6758 Psa-Chr5 560617355 560620287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6758 1 403 IDZ Gene Family AT1G55110 50.218 6.60e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g6758 zf-C2H2_jaz 4.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6758 K25870 - cam:101511798 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4341 4 382809324 382812586 Psa5g6758 5 560617355 560620287 ECH
Psa5g6758 5 560617355 560620287 Psa5g6758 5 560617355 560620287 ECH