Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6740 ATGGACACTGAAGAAGACCCTCCTCAAAACCAAGCTAAAAGACAGAAATGTTCGGCATGCTATAAACAATATAAGAAGAAAGAACATCTTATTGAGCACATGAAAACCTCTTACCACTCTATCCATCAGCCGCGGTGTGTGATATGTAGAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTCATGGGACCTTTGGCTAAAGGACTTTGTTCAGCGATTTTCTCGCAAGGGGGTTGCAAACTTTGTCTGACACTAGCTGATAGTCCTGCTTCTCTCAGTGAGCATAGAGAAACTTGTCAACTAACCGCACCTGTTCCTCTTGGCACAAGTGAATTTCCCTATACAGACTCCAATATCGATTTTCTGGATTCTTCTGATGAAAACGATGCTGACTGGCGTCCTAAAGCAATTGCATTGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGGTCACTGGAAGTTTGTGCTAGAGTATGCTTGGTTGATGAAGATGAGAACTTAATCTTGCACACATATGTCAAACCTCGAATCCCTGTTACTAATTATAGGTATGATATAACCGGGCTGACCGAAGAGCATCTTCGAGATGGTATGCCGCTTAAGCAAGTTCGGGAAAAGATATTGCAAATTCTATACAATGGAGAGTCCATTGGAAAAGTTAGATTGGACGGTGGAAAGGCCAGGCTTCTTGTAGGGCATTCTTTGGCATATGATTTGGATTCCTTGGAAATGAGTTATCCTGATCACTTGATGAGAGACACTGCACAGTACCGTCCATTGTTGAAGACAAACAGTTCCAGCCATTCGCTCAAGTATCTCACCAGAACATATCTAGGTTATGATATTCAAACCGGCATACACGACCCATATGAAGATTGTATTTCTGCGATGAGACTGTACAAAAGAATACGAGGTCAAAGCCATGAGGAGAAAGGCTACGGAAAGTTGACTCCAAGTGACAACATCGTTGAAATGTGTGACAGATGGAGATCCAAGGAACTGGACAACCTCACTCCAGACGAACTTTATGCCATCTCAGAATCAGACTATAGGTGTTGGTGTTTGGATTTGAAGCCAAAGTTGGCAAAAGCTTAA 1101 0.4269 MDTEEDPPQNQAKRQKCSACYKQYKKKEHLIEHMKTSYHSIHQPRCVICRKHCKSFESLREHLMGPLAKGLCSAIFSQGGCKLCLTLADSPASLSEHRETCQLTAPVPLGTSEFPYTDSNIDFLDSSDENDADWRPKAIALDCEMVGGGSDGSLEVCARVCLVDEDENLILHTYVKPRIPVTNYRYDITGLTEEHLRDGMPLKQVREKILQILYNGESIGKVRLDGGKARLLVGHSLAYDLDSLEMSYPDHLMRDTAQYRPLLKTNSSSHSLKYLTRTYLGYDIQTGIHDPYEDCISAMRLYKRIRGQSHEEKGYGKLTPSDNIVEMCDRWRSKELDNLTPDELYAISESDYRCWCLDLKPKLAKA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6740 366 Pfam Exonuclease 139 302 IPR013520 -
Psa5g6740 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Psa5g6740 366 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Psa5g6740 366 PANTHER EXONUCLEASE FAMILY PROTEIN 11 362 - -
Psa5g6740 366 Gene3D - 135 317 IPR036397 GO:0003676
Psa5g6740 366 SMART exoiiiendus 137 311 IPR013520 -
Psa5g6740 366 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 362 - -
Psa5g6740 366 SUPERFAMILY Ribonuclease H-like 138 308 IPR012337 -
Psa5g6740 366 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6740 Psa-Chr5 559593112 559597855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6740 1 358 C2H2 Transcription Factor Family AT3G27970 51.105 1.85e-134 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6740 K18327 - gmx:100788682 579.326