Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6727 ATGAACATCAACATTTCAAGAAACGGCAACGGAGGAACCCCACAGGCTTGTTCTGCTTGTAAATACCAACGTAGGAAGTGCGGTCGAACCTGTATTCTCGCACCATATTTTCCTCACGAACGTCAAAAACAGTTCCTTAACGCCCATAAATTATTCGGTGTCGGTAAAATCACCAACATGCTTAAGAATGTTCCTCTTGAATCTAGAGACCTAACCATGTCTACTATTGTTTATCAATCTGATATGCGTGCTTTGGATCCTGTTGGTGGTTGTTATAGACATATTCACAATCTTCAATCTCAGATTGATTTTTATACCGCCCAGCTTCATTTCACTCTTCAACAGATTGCTATTTGTAGAGCTGCTGCAGCTTCTTCTTCTTCCCATCATCATCATCATCATTATGGTGATATCGCCGTCGTTCCCGATGATAATAATATTAATATTAATAATAATAATCATGATGATGAAGCTATTATTAATCCTCCTAATTATCAACATCAACATCAACATCAGCAACAGCAGCAGCATTTTGTTGGAGAACAGTTGGATGATATGAATATGTTTCAACCGCAACCGCAAATGCAACCGCAGTATGTTGTTGATGATGTCGTCGGTGTCAACCCTAATTATGTTCCTTTACAAGAGGATCTTAACACGTGGGTGAATTCTATACCGTTGTCGCCGCCGCTATCGTTGCAGGAGAATAAAAAGGAGGTGGATGAGGTAGATCAAGAACGGCTTGGCGATGACCATTTAAATGATGATCAGAAACCCGGTTTTGACCTAATCAATGAAATGAATTCGTCGGATATCGTCAGAAGTACTATCGATCCGAGACACCAGTTATGA 852 0.4014 MNINISRNGNGGTPQACSACKYQRRKCGRTCILAPYFPHERQKQFLNAHKLFGVGKITNMLKNVPLESRDLTMSTIVYQSDMRALDPVGGCYRHIHNLQSQIDFYTAQLHFTLQQIAICRAAAASSSSHHHHHHYGDIAVVPDDNNININNNNHDDEAIINPPNYQHQHQHQQQQQHFVGEQLDDMNMFQPQPQMQPQYVVDDVVGVNPNYVPLQEDLNTWVNSIPLSPPLSLQENKKEVDEVDQERLGDDHLNDDQKPGFDLINEMNSSDIVRSTIDPRHQL* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6727 283 Pfam Lateral organ boundaries (LOB) domain 16 111 IPR004883 -
Psa5g6727 283 PANTHER LOB DOMAIN PROTEIN 13 273 - -
Psa5g6727 283 MobiDBLite consensus disorder prediction 235 258 - -
Psa5g6727 283 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Psa5g6727 283 MobiDBLite consensus disorder prediction 233 258 - -
Psa5g6727 283 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6727 Psa-Chr5 559063923 559069252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6727 15 180 AS2 family AT3G13850 44.767 1.36e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa5g6727 LOB 3.6e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6727 5 559063923 559069252 Psa4g4349 4 383151087 383152388 PCT