Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6708 ATGGGTGCCTCAGGAAAATGGTTCAAATCACTTCTTTCTCATAAAAAAATCTCATCTTCAACCACAACAACAGATCAAGAGAAGAAGACGAGTGGTACTACTAAGAAGAAATGGCAGCTATGGAAGTCATCTTCAGAAGGATCTTCTTCTTCAAGTATGAAGAAGAGTGGTGGTGGTGGTACTGCTTCCGTGTGCGATTCTTCTCTTACTGCTGCTGCGGTTGCCGTGGTGGTTCGAGCTCAACCTAAGGATTTCAACCTAATCAGGCAGGAATGGGCTGCTATTCGAATTCAGGCTCTGTTTCGAGCCTTCTTGGCTAGAAGAGCTTTGAGGGCATTGAGGGCAGTGGTGAGGCTGCAAGCTATATTTAGAGGCAGGCAAGTGCGAAAACAAGCCGCAGTTACTCTAAGGTGTATGCAGGCTCTTGTTAGAGTTCAAGCTCGCGTAAGGGCTAGGAATGTAAGGAATTCTCCAGAAGGTAAAGCAGTTCAGCAGTTGTTAGACGACCATCGCAACCAAGCTGATTCTGTTAAACTCATAGAGCAAGGATGGTGTGAAATTCCTGGAACTGCAGATGAAGTTAAAGCAAAGCTAAGGCTGAGACAAGAAGGAGCAATCAAGAGGGATAGAGCAATGGCATACTCTCTTTCGGCACAGTCAAGAATGAGTGCTAGTCCGAACTCGAAATCAGCGACTCCTCTCAAGCATCATCACAATCGCGACAACAAGAGCTTAGGAAACGGGTTGTTAGAACGCTGGATGGCGAACAAGCCATGGGAGAGTCCAATGTCAAACAGGAAGAGTGAAGAGCTTGTTCCTACTTTTCAAACGAGAAGGAATGGCATGACAACTAGGATTTCATCTCTTAAAATCTGTCAGCAAACTCCATCCTCTTCCACCATAAGCTCCGAATACATGAATGACGATAGCGTTATATCATCTTCATGTACATCTGGATCTCCATCTATCATGCCATTCAGCAATACTACTGTTATGGCGGAAGCAAGAGAGGAAAAAGATGTACCAAGCTACATGAGTTTGACAGAATCAACAAAGGCTAAACTCAAAGCTTTAAGGAGCTCTTCGCAGAATTCTAAGAGACTCACAATGGACGATTGTCTGTCTCATAACACAAATTCAACGTTTCTGAATGGATATAATAGCATAAGCAGTTCTGGCTCCGACCCTTCGGTTAATATATGGAAGGATCGTTGTGCGACACCTCTAAGAGCGAGTTACTATCAAAAACGATACGGAAGGAGATAG 1266 0.4423 MGASGKWFKSLLSHKKISSSTTTTDQEKKTSGTTKKKWQLWKSSSEGSSSSSMKKSGGGGTASVCDSSLTAAAVAVVVRAQPKDFNLIRQEWAAIRIQALFRAFLARRALRALRAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQQLLDDHRNQADSVKLIEQGWCEIPGTADEVKAKLRLRQEGAIKRDRAMAYSLSAQSRMSASPNSKSATPLKHHHNRDNKSLGNGLLERWMANKPWESPMSNRKSEELVPTFQTRRNGMTTRISSLKICQQTPSSSTISSEYMNDDSVISSSCTSGSPSIMPFSNTTVMAEAREEKDVPSYMSLTESTKAKLKALRSSSQNSKRLTMDDCLSHNTNSTFLNGYNSISSSGSDPSVNIWKDRCATPLRASYYQKRYGRR* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6708 421 MobiDBLite consensus disorder prediction 17 56 - -
Psa5g6708 421 Gene3D - 89 139 - -
Psa5g6708 421 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Psa5g6708 421 MobiDBLite consensus disorder prediction 218 241 - -
Psa5g6708 421 MobiDBLite consensus disorder prediction 218 232 - -
Psa5g6708 421 PANTHER IQ-DOMAIN 5-RELATED 1 419 - -
Psa5g6708 421 SMART iq_5 89 111 IPR000048 GO:0005515
Psa5g6708 421 SMART iq_5 112 133 IPR000048 GO:0005515
Psa5g6708 421 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Psa5g6708 421 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Psa5g6708 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 132 IPR027417 -
Psa5g6708 421 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Psa5g6708 421 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 419 - -
Psa5g6708 421 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6708 Psa-Chr5 558429048 558431718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6708 1 403 IQD Protein Family AT1G72670 45.794 9.97e-92 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6708 - - mtr:MTR_2g099780 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6708 5 558429048 558431718 Psa4g4326 4 381669967 381672845 PCT