Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6706 ATGGAGTACCCTTTTTATCCTAAGGGAAGAGGATTTGGGTATTGGCAGTCTCCGGGAACTGAGATGGAAGGATCAGCATCATTAGATGGTGGAATCAGCAATTTGGTGTCAGAGGATATGCCTAGCAGCTTCTCCGAGCTCATGAATTTTGATAATTATGCTGGTTTGTATTCTGGCCCATCCATGACTGATCAGATTATGGCTAATGAGCTTTCATCTCTTGCCTCGGTATTATATCAATCACCGGATGGATTCAATCCAGTTGAACAGAACTGTGGGCAATTCTATATGCCAGGAGTTAGTGGAAATTACAATAATTTGGATAGCTCCCCCGTTTTTGCGGAGAAAGTTGTGCGTCAGAAAATGGACACCCTACGTGGTTTTTTAGACAACAACAACAATGATGCAAATAACTTAAGTTCTAAGCAAAAAATCAACGACTCTACGCAGCGTGTTAATACTTTGTCACTTGATGAAAAAATGCTGAAAGCTTTGTCCTTCTTTAAAGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGCATGATGGTCAAATCTTCTTAAGCACTAGTGAGCAACCTTATTTACTAGATCAAATGCTTGCAGGGTATCGTGAAGTGTCGAGGACATTTATATTTTCTACAGAAGGAAAACCAGGCTGTTTACCGGGACTTCCTGGTCGTGTTTTTATCTCCAAAGTTCCTGAATGGACTTCCAATGTTGGTTATTACAATCCAAGTGAGTACTTGAGGGTTGAACAGGCAAGAAATCACGATGTTCGTGGATCAATTGCTTTTCCCATATTTGATCTGCACTCTGGAATGCCATGTTGTGCTGTCTTGGAACTTGTCACCACGAAGGAAAAGCTTGATTTTAACAGAGAATTGGAAATTATTTGTCGTTCACTTCAGCTTGTAAATTTAAGGACTACTGTGCCTATTCGGCTGCTTCCCGAGTGTCTTTCGACCAATAAAAGAGCTGCTTTAACAGAGATAATTGATGTGTTACGATCTGTGTGTCATGCACATAGATTGCCACTGGCACTAACATGGATTCCTTGTTTTCACACTGAGGGCACAAGAGAAGAAACTACTAGAATACAAATTAAAGAGGGCAATTCAAGTTGTAAAGAGAAAAGCATACTGTGTATTGAAGAGTCAGCTTGCTATATAACTGATAGAGTGATGGAAGGATTTGTGCGTGCATGCATTGAACATCCTCTTGAGGAAGGGAAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCACCCTTACTTCTATTCTGACGTGAAAACATATGATATCAGCGAGTACCCGCTTGTTCATCATGCACGGAAGTTCAATTTGAATGCTGCAGTTGCAATCAGGCTAAGGAGTATCTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTATCAATATGAAAGGGAGTTCAGAGCAGCAACTTTTATTAGACAACCTCTCGGGTACCATGCAGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGGTGCTGAACTGTCAGGAATAGAATGTAAACATGCGGGGTTTGGAAACAAAAATGTCCCGAGTTTTCCCCCCTCGTCCACGAGAAATTCTCAGATACCTTTAAATGAAAACCATAGCTCTGTCCAGAAGCTGTCGTCGGAGGCTTCAGACCTGAGAAACAGTGGAAAAGAGCCTTCTAACCAGGAAAAAAATGGATCGAAAAGGCGAGCTGAGAAAAGTAGAACCACATCAGAGAAGAAAGTTAGCTTGGGTGTTCTCCAGCAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCTTTGAAGAAAATTCAGACTGTGCTTGACTCTGTTCAGGGAGTTGAAGGCGGGTTAAAGTTTGATCCTTCCATGGGGGCATTTGTGGCAGGAGGGACAACCATCCAAGAAATTGATGAAAGTAAAAATCTCCTTTTCCAGGAGAAAAGTACTACACAAGATTCTGAGCCTATTTCAGAAGATGCTGCCTCGGTGCCTCCTGCACTTTGTAGTGAAGGTGAGAATTCGGCAAATAAGTTGGATAGACAATTGAAGGGAACCAACGCATCTATGATTGATTGCAGTGAAGATTCAAAATCATTTGCAATGCATGATTTTCCTGAACAAGCTTGTTTTAGTTCTGTTCTTGCAAAAGGTAATGCTATTGGCCAGATAAACTCCTTTGTTGCTGATGACATGGACAGTGGCGCGGATGGGGACGATGAAGTTGTTGAACGCAGCAATCCTACGTCTTCGAGCTTGACAGACTCATCTAGTGGCTCGGGTTCAATCATGCACGAGAGTTCATCTAGTTACCAGAACTTTAAGAACCAGAAGCAGTCCAAAGCCAAATCAACCATCGTTGATAGCAGGTCAAAAATCACTGTGAAAGCTACCTATGGAGAAGACACCATTCGCTTCAAGTTTGATCCATTCACAGGTTGTTTTAAACTATATGAAGAAGTTGCAGCAAGATTCAAACTGCAATACGGGACCTTCCAGCTCAAATATCTAGATGATGAAGAAGAATGGGTGATGTTAGTAAACGACTCGGATTTGCAAGAGTGTTTAGAAATATTGAATGATATGGGGACACGGAATGCAAGGTTTCTTGTTCGTGATATGCCTTGA 2748 0.4152 MEYPFYPKGRGFGYWQSPGTEMEGSASLDGGISNLVSEDMPSSFSELMNFDNYAGLYSGPSMTDQIMANELSSLASVLYQSPDGFNPVEQNCGQFYMPGVSGNYNNLDSSPVFAEKVVRQKMDTLRGFLDNNNNDANNLSSKQKINDSTQRVNTLSLDEKMLKALSFFKESAGGGILAQVWVPIKHDGQIFLSTSEQPYLLDQMLAGYREVSRTFIFSTEGKPGCLPGLPGRVFISKVPEWTSNVGYYNPSEYLRVEQARNHDVRGSIAFPIFDLHSGMPCCAVLELVTTKEKLDFNRELEIICRSLQLVNLRTTVPIRLLPECLSTNKRAALTEIIDVLRSVCHAHRLPLALTWIPCFHTEGTREETTRIQIKEGNSSCKEKSILCIEESACYITDRVMEGFVRACIEHPLEEGKGVAGKALQSNHPYFYSDVKTYDISEYPLVHHARKFNLNAAVAIRLRSIYTNDDDYILEFFLPINMKGSSEQQLLLDNLSGTMQRICKSLRTVSGAELSGIECKHAGFGNKNVPSFPPSSTRNSQIPLNENHSSVQKLSSEASDLRNSGKEPSNQEKNGSKRRAEKSRTTSEKKVSLGVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSMGAFVAGGTTIQEIDESKNLLFQEKSTTQDSEPISEDAASVPPALCSEGENSANKLDRQLKGTNASMIDCSEDSKSFAMHDFPEQACFSSVLAKGNAIGQINSFVADDMDSGADGDDEVVERSNPTSSSLTDSSSGSGSIMHESSSSYQNFKNQKQSKAKSTIVDSRSKITVKATYGEDTIRFKFDPFTGCFKLYEEVAARFKLQYGTFQLKYLDDEEEWVMLVNDSDLQECLEILNDMGTRNARFLVRDMP* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6706 915 MobiDBLite consensus disorder prediction 529 569 - -
Psa5g6706 915 ProSiteProfiles RWP-RK domain profile. 571 657 IPR003035 -
Psa5g6706 915 Pfam RWP-RK domain 590 637 IPR003035 -
Psa5g6706 915 MobiDBLite consensus disorder prediction 570 587 - -
Psa5g6706 915 PANTHER PROTEIN NLP8 5 720 IPR045012 GO:0003700
Psa5g6706 915 PANTHER PROTEIN NLP8 719 915 IPR045012 GO:0003700
Psa5g6706 915 ProSiteProfiles PB1 domain profile. 832 906 IPR000270 GO:0005515
Psa5g6706 915 Pfam PB1 domain 833 912 IPR000270 GO:0005515
Psa5g6706 915 SMART PB1_new 832 914 IPR000270 GO:0005515
Psa5g6706 915 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 719 915 - -
Psa5g6706 915 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 720 - -
Psa5g6706 915 SUPERFAMILY CAD & PB1 domains 826 913 - -
Psa5g6706 915 MobiDBLite consensus disorder prediction 776 816 - -
Psa5g6706 915 MobiDBLite consensus disorder prediction 785 816 - -
Psa5g6706 915 MobiDBLite consensus disorder prediction 529 588 - -
Psa5g6706 915 Gene3D - 828 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6706 Psa-Chr5 558154096 558162147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6706 1 914 NLP Transcription Factor Family AT2G43500 48.051 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Psa5g6706 PB1 1.1e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6706 - - gmx:100804426 1254.58