Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6699 ATGGGACATCACTCTTGCTGCAACAAACAGAAAGTTAAAAGAGGCTTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACTACTTATGGACATGGATGTTGGAGCTCTGTGCCTAAACTTGCAGGTTTGCAAAGATGTGGAAAAAGTTGCAGGTTGAGATGGATTAATTATTTAAGACCTGATTTGAAACGTGGAAGCTTTTCTCCTCAAGAAGCTGCTCTTATTATTGAACTTCACACCATTCTTGGCAACAGATGGGCACAGATAGCAAAACATTTACCAGGAAGAACTGATAATGAAGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAACTACTTTCACATGATTTTGTTCCTTCTTTAACTACATTTTCTGATCATATTCACTGTCCTAGAAATGAAACTTTCTTCCCTTTGTTAAATGACAATCCTATCCTTAACAACTCTCATCATCATCATCATCTATACTTTCCCATCAATCTTCCATCTCCAATCCTACAAGATCAAAATGATCCTATCAACAACATTTTGAATGCCAATTTTCATACTCCATCTTTGCCAGAAATAGATGATTTTGTTTCTAGCCTCCCATTTTCTTCTTCCGATTCACAGCATCATCATCATGATCTTATCCATCAAATTGTGGCTGCAGAAGCCAATAACAACGATGTTCAAGCTGTGGAGTATAATATCATGGATGCTCTCATCATGTCATCATCATTACCATCCTCAACAACAACGTCTTCATCATCACCACCACTATCATTCTATCAAGCACCAGAAAAAATTCTCACAAAACCTATCCTTCCTTCAACTTGGGAGTCATGA 840 0.3714 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDFVPSLTTFSDHIHCPRNETFFPLLNDNPILNNSHHHHHLYFPINLPSPILQDQNDPINNILNANFHTPSLPEIDDFVSSLPFSSSDSQHHHHDLIHQIVAAEANNNDVQAVEYNIMDALIMSSSLPSSTTTSSSSPPLSFYQAPEKILTKPILPSTWES* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6699 279 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa5g6699 279 PANTHER TRANSCRIPTION FACTOR MYB26 1 230 - -
Psa5g6699 279 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa5g6699 279 CDD SANT 17 61 IPR001005 -
Psa5g6699 279 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa5g6699 279 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Psa5g6699 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa5g6699 279 Gene3D - 69 116 - -
Psa5g6699 279 PANTHER MYB DOMAIN PROTEIN 55 1 230 - -
Psa5g6699 279 CDD SANT 69 109 IPR001005 -
Psa5g6699 279 SMART sant 13 63 IPR001005 -
Psa5g6699 279 SMART sant 66 114 IPR001005 -
Psa5g6699 279 Gene3D - 11 67 - -
Psa5g6699 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa5g6699 279 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6699 Psa-Chr5 557953331 557954507 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6699 1 118 MYB Transcription Factor Family AT3G13890 95.763 8.76e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g6699 Myb_DNA-binding 9.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6699 K09422 - gmx:102662609 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6699 5 557953331 557954507 Psa5g6699 5 557953331 557954507 ECH