Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6686 ATGGAAGGTCGAGGTCGCTCTGTGGAAGATATTTTCGAGGATTTCAAAAGCCGAAGAGCTGGAATCATCAAAGCCCTAACTGTTGATGTTGAAGATTTCTACAGACAATGTGATCCTGAGAAAGAGAATTTGTGCTTATATGGATTACTTAATGAGAAGTGGGAAGTGAATTTACCTGTTGAGGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGTATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCCTTAGTTGCTGTTCATAGTGATACATGGTTGCTTTCCCTTGCATTCTACTTTGGAGCTAGATTTGCGTTTGACAGAACTGACAGGAAACGTCTATTCAATATGATTAATGAACTACCAACAATATTTGAAATTGTTAATGGCTCAACCAAGAAACCAGCCAAAGAGAAGTCCTCAGTCTCAAACAACAGTGGCAGCAAATCTAAGTCCAGTTCTAAAGTGCGGGCTCCTGAAACTCAGAGCAGACTACCAAAGGCATTACAACCAAAAGATGAGGAGGAAGGACTGGAAGAGAATGATGATGATGAACATGGAGAAGCCATGTGTGGGGCTTGTGGTGATAATGATGGCACTGATGAGTTCTGGATTTGCTGTGATATTTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAAATCACTCCAGCACGGGCCGAGCATATCAAGCAATACAAGTGCCCCTCATGCAGTAGTAACAAGAGAGCTCGCTAG 750 0.4307 MEGRGRSVEDIFEDFKSRRAGIIKALTVDVEDFYRQCDPEKENLCLYGLLNEKWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSLAFYFGARFAFDRTDRKRLFNMINELPTIFEIVNGSTKKPAKEKSSVSNNSGSKSKSSSKVRAPETQSRLPKALQPKDEEEGLEENDDDEHGEAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6686 249 MobiDBLite consensus disorder prediction 140 189 - -
Psa5g6686 249 SMART PHD_3 195 243 IPR001965 -
Psa5g6686 249 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Psa5g6686 249 CDD PHD_AL_plant 196 245 IPR044104 -
Psa5g6686 249 MobiDBLite consensus disorder prediction 140 165 - -
Psa5g6686 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Psa5g6686 249 Pfam PHD-finger 195 244 IPR019787 -
Psa5g6686 249 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 249 - -
Psa5g6686 249 PANTHER CPG BINDING PROTEIN 1 249 IPR045104 GO:0006355|GO:0042393
Psa5g6686 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Psa5g6686 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Psa5g6686 249 SUPERFAMILY FYVE/PHD zinc finger 185 245 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6686 Psa-Chr5 557546266 557551039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6686 6 249 Alfin-like Transcription Factor Family AT3G42790 72.541 6.20e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Psa5g6686 Alfin 1.1e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6686 - - gmx:100170696 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4239 4 374669557 374672881 Psa5g6686 5 557546266 557551039 ECH
Psa5g6686 5 557546266 557551039 Psa5g6686 5 557546266 557551039 ECH
Psa5g6686 5 557546266 557551039 Psa4g4239 4 374669557 374672881 PCT