Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6685 ATGAAGTGTTTATGTGAGAAAGACTCTGCTCTATGTTCTGTTCATTCAACTTCACACCGTGTTTTCGGATGCCCGTCATGGGGAACTTCTTCTGAACCTGAAGTCCAACAAGCATCCATGTCCAAAAGTTTGAGCTTCCAAGTGGATGCTCTGCCACAAAAATGCCACGACAAGAGTAAGGCACTGAGTTTTCAATTACACGAACATGATTCATCTTCAACTCAATCGACTGATTCATCACAATCAGGTCAAATTCCTTTCCAGCCTAGTTCTTCTACTGGTTCAACATTTAAGGGAACCAAGGGGAACGATATGGGATGTCTCATCGGGTCATCATCTATTGGGAGTCCAAATCTCACCATCCATCCTCCATTAGTGGATCCCAGCCAATCACTTGCGCATATTGCATTCCACTTTGCTGATCCATGCTACAGTGGCCTACTTTCTGCTTCATATGGCCATCAATATAAGCTAATGGAAACAGCTTCTGTCCGAGTTCCCCTGCCGTCTGATATGATGGAAGAACCCATATATGTGAATTCGAAGCAGTACCATGCTATACTGAGGCGAAGACAGTGTCGTGCAAAACTTGAAGCACACAACAAACTCATCAAGGATCGTAAACCATATCTTCACGAGTCCCGTCATGTACATGCATTGAAGAGAGCTAGAGGTGCTGGTGGCCGCTTCCTCAATGCTAAAAAACTCGAAGAATCGAAGCTCGCATCACAAAACCATAGCCAAAATGTTTCCACCAGCTATACTTGTTTGAATTTGAATGCAAATATGCCAGAGTCTAAAATGCACGATCAGGTTGAAAACTATAGAGATGATGCTAATGCATCTGATGTCACATATGGATCTAAAAGGAATGAAGAGTTCCGGCAGCAACAGGAGTTGGAGTTCAGGTTATGCAGTTACCCTTCTTCTCAGACTGGAAGAAACATGCAGGATTATACAACTGACAAGTGTGTTGGTGCGAATCAACGCCACCGACTATCGGTTCTCATGTGA 1014 0.4369 MKCLCEKDSALCSVHSTSHRVFGCPSWGTSSEPEVQQASMSKSLSFQVDALPQKCHDKSKALSFQLHEHDSSSTQSTDSSQSGQIPFQPSSSTGSTFKGTKGNDMGCLIGSSSIGSPNLTIHPPLVDPSQSLAHIAFHFADPCYSGLLSASYGHQYKLMETASVRVPLPSDMMEEPIYVNSKQYHAILRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLEESKLASQNHSQNVSTSYTCLNLNANMPESKMHDQVENYRDDANASDVTYGSKRNEEFRQQQELEFRLCSYPSSQTGRNMQDYTTDKCVGANQRHRLSVLM* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6685 337 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 22 301 - -
Psa5g6685 337 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Psa5g6685 337 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Psa5g6685 337 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 230 IPR001289 GO:0003700|GO:0006355
Psa5g6685 337 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 22 301 IPR001289 GO:0003700|GO:0006355
Psa5g6685 337 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Psa5g6685 337 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Psa5g6685 337 Gene3D - 173 234 - -
Psa5g6685 337 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Psa5g6685 337 MobiDBLite consensus disorder prediction 66 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6685 Psa-Chr5 557538762 557542571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6685 14 245 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.621 1.67e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Psa5g6685 CBFB_NFYA 8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6685 K08064 - gmx:100500765 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6685 5 557538762 557542571 Psa5g6685 5 557538762 557542571 ECH
Psa5g6685 5 557538762 557542571 Psa4g4238 4 374604588 374606767 PCT
Psa7g4239 7 344297568 344300643 Psa5g6685 5 557538762 557542571 PCT