Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6677 ATGGCGAACCCATCTGGGACTGGTAACCATCAGGAACAACATACTCATGTCAATCCTTCTTCTTTTAACGGCAATTCGGCTCCCGAGAGTTCTTCAGGTCTGGTCATGAACATGAAGCATAATCCAGGGATATCCCTTGATTGGACGCCTGAAGAACAAGCCACCCTCGAAGATGGCCTCTCAAAATATGCCTCAGAATCTAACATAGTACGCTATGCAAAGATTGCACAACAGCTAAATAACAAGACAGTCCGGGATGTGGCTCTGCGTGTCAGGTGGATGAATAAGAAGGAAAACAGCAAGAGAAGGAAGGATGATCACAATTTGTCCCGAAAAAGTAAAGATAAAAAGGAAAGGGTTTCTGATCCCGCAGCAAAATCATCTCAATTTTCTGCTCGACCCAATGTCCCTCCATATGCGCCACCAATGATTACAATGGACAATGATGATGGCATCCCATATGCAGCAATTGGAGGCCCTACTGCTGAGCTATTAGAGCAAAATGCACAGGCCTTGAGCCGAGTCTCTGCAAACATTTCCTCTCTCCAGATACAGGACAACATCAATCTTTTGTGCCAAACTAGAGACAACATCATTAGAATAATGAATGAGATGAATGATTCACCTGAGGTGATGAAGCAAATGCCGCCTCTTCCTGTGAAGATGAATGAAGAACTGGCGAATTCCATACTTCCACTTCCAAGAACACCTCTCCAGCCTCAGTCATGA 729 0.4472 MANPSGTGNHQEQHTHVNPSSFNGNSAPESSSGLVMNMKHNPGISLDWTPEEQATLEDGLSKYASESNIVRYAKIAQQLNNKTVRDVALRVRWMNKKENSKRRKDDHNLSRKSKDKKERVSDPAAKSSQFSARPNVPPYAPPMITMDNDDGIPYAAIGGPTAELLEQNAQALSRVSANISSLQIQDNINLLCQTRDNIIRIMNEMNDSPEVMKQMPPLPVKMNEELANSILPLPRTPLQPQS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6677 242 PANTHER BNAC03G35350D PROTEIN 23 235 - -
Psa5g6677 242 SMART sant 44 97 IPR001005 -
Psa5g6677 242 CDD SANT 48 97 IPR001005 -
Psa5g6677 242 MobiDBLite consensus disorder prediction 95 138 - -
Psa5g6677 242 SUPERFAMILY Homeodomain-like 40 101 IPR009057 -
Psa5g6677 242 MobiDBLite consensus disorder prediction 1 38 - -
Psa5g6677 242 MobiDBLite consensus disorder prediction 95 123 - -
Psa5g6677 242 Pfam Protein of unknown function (DUF3755) 181 214 IPR022228 -
Psa5g6677 242 Gene3D - 48 122 - -
Psa5g6677 242 PANTHER FINGER CCCH DOMAIN PROTEIN, PUTATIVE (DUF3755)-RELATED 23 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6677 Psa-Chr5 556881434 556886230 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g6677 DUF3755 7.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6677 - - cam:101498979 437.573