Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6672 ATGGAGATAAGTCCTTACAATACTTCCAAGAAGAAAACACAGTTGAAGAAGCTGATCAACCAAAATAACTATATTCTTCATGAAGCTTCTTCACACATAGACATGATTCCTACATCATCAAGCAATCATCAAACATCTTCAGATAATTCTAGTGAAACATGTCATCATGATCAAGATGGTAAATGGTCTTCCAAACTTCTCAAAGAGTGTGCAATAGCAATATCTAATAGAGATTCATCCAAAATCCACCATCTTCTTTGGATGTTAAATGAGTTATCTTCACCTTATGGTGATATTGATCAAAAACTAGCTTCTTATTTTCTACAAGCACTTTTCTCCAAGGCAACACAATCTGGTCACAAGTGTTACAAAACTCTCTCTTTAATCGCTTCCAAAAACCACTCTTTTGATTCAGCAAGAAAATTGATACTCAAGTTTCAAGAGGTGAGTCCATGGACAACTTTTGGACATGTGGCATCAAATGGTGCTATTTTGGAAGCTTTAGAAGGAGAGAAAAAGCTTCATATAATTGATATTAGTAACACACTTTGTACTCAATGGCCTACTCTTCTAGAAGCTTTAGCTACAAGAAACGATGAAACACCTCATCTTAAGCTCACAATTGTTGTCACAAGCAAAAACTCTAGTGATGTTGTTATGAAGGAAGTTGGTCAAAGAATGGAGAAATTTGCTAGGTTAATGGGAGTACCTTTTGAGTTGAATGTTATTAGCGGTTTGAAACATCTAAGAGAGTTAACAAAAGAGAGATTAGGAATTCAAGAAGATGAAGCAGTAGCTTTGAATTGTGTTGGAGCATTGAGAAGAGTTGAAGTAGGAGAAAGAGAGAGTTTGATTAAGTTTTTCAAATCACTTTCTCCTAGAGTTATAACATTTGTTGAGGAAGAAGGTGATTTTGTTAGTGATGACTTTGTTAAATGTTTCGAAGAGTGTCTTAAATTCTATACACTTTATTTTGAGATGTTAGAGGAGAGTTTTCCACCAACAAGTAATGAAAAGTTGATGTTGGAAAGAGAGTGTTCAAGAAGCATAGTTAGGGTTTTGGCTTGTGATCATGAATTTGATGATGAAGAAAGTGGTGATGATTGTGAGAAAAGAGAGAGAGGTAAAAAATGGTTTGAAAGACTAAAGAATGAATTTTCACCTTGTGGATTTAGTGACGATGTTGTTGATGATGTCAAAGCGTTGCTAAAAAGGTACCAAAGTGGTTGGTCACTTGTTGTGCCTCAAGGAGATGATAATATTTCAGGAATTTACTTGACATGGAAGAATGAACAAGTTCTTTGGGCATCAACATGGAAACCCTAG 1326 0.3522 MEISPYNTSKKKTQLKKLINQNNYILHEASSHIDMIPTSSSNHQTSSDNSSETCHHDQDGKWSSKLLKECAIAISNRDSSKIHHLLWMLNELSSPYGDIDQKLASYFLQALFSKATQSGHKCYKTLSLIASKNHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALEGEKKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTIVVTSKNSSDVVMKEVGQRMEKFARLMGVPFELNVISGLKHLRELTKERLGIQEDEAVALNCVGALRRVEVGERESLIKFFKSLSPRVITFVEEEGDFVSDDFVKCFEECLKFYTLYFEMLEESFPPTSNEKLMLERECSRSIVRVLACDHEFDDEESGDDCEKRERGKKWFERLKNEFSPCGFSDDVVDDVKALLKRYQSGWSLVVPQGDDNISGIYLTWKNEQVLWASTWKP* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6672 441 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 36 440 IPR005202 -
Psa5g6672 441 Pfam GRAS domain family 65 440 IPR005202 -
Psa5g6672 441 PANTHER PROTEIN SHORT-ROOT-LIKE 36 440 - -
Psa5g6672 441 ProSiteProfiles GRAS family profile. 54 440 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6672 Psa-Chr5 556664247 556666037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6672 59 441 GRAS Transcription Factor Family AT4G37650 51.741 5.28e-144 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa5g6672 GRAS 1.9e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6672 - - lang:109357825 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6672 5 556664247 556666037 Psa5g6672 5 556664247 556666037 ECH