Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6668 ATGGAGCCTCGTATTGGGAACAAATTCCGTCTTGGCCGCAAGATTGGCAGCGGATCCTTCGGCGAGATCTATCTCGGTACTAATATTCAGACAAATGAAGAGGTTGCAATCAAGCTTGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTATGAATCAAAGTTGTATAAAGTACTTCAAGGAGGAACTGGTATCCCAAATGTGAGATGGTTTGGCGTTGAAGGAGAGTACAATGTTCTTGTGATGGATTTACTAGGACCTAGTCTCGAAGATTTATTCAGTTTTTGTAGTCGCAAATTGTCCCTTAAAACTGTACTCATGCTTGCTGATCAGATGATAAATCGTGTTGAATATATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTGATGGGTTTGGGGAGGCGTGCTAATCAAGTTTATGCCATTGACTTTGGTCTCGCTAAAAAATACAGAGACACCTCTACCCATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGATATGCTAGTATGAATACACATCTTGGAATTGAGCAAAGCCGTAGGGATGACTTAGAATCACTTGGATATGTTCTTATGTACTTTTTGAGAGGAAGTCTTCCATGGCAGGGATTGAAAGCAGGTACTAAGAAACAGAAGTACGAAAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCCTTATGCCGTGGCTATCCCTCAGAATTTGCTTCGTACTTCCATTACTGTCGGTCATTGCGGTTTGATGATAAACCAGATTATGCATATTTGAAAAGGCTTTTTCGTGACCTTTTCATTCGTGAAGGGTTCCAGTTTGATTATGTCTTTGATTGGACCATCTTGAAGTATCAGCAATCTCAAATTGCCACTCCTCCTTCACGTGCCATTGGTTCTGGTGCTGGGCCAAGTTCTGGCATACCACCAGCTGTTGTGAGTGCTACTGATAGACCGACAGGTGGGGAAGAGGGTAGACATGCTGGTTGGTCTTCATCAGATCCTGCTCGTAGAAGAAACTCTGGACCTATTGCAAATGATGTAAACTTATTTAGACAAAAAGCCCCGGTTCCAAGTGACTCAACTGCATCTAAAGATGCTATGTTGTCTAGTTCTAATTTCTTCCGACCAAGTGGATCCACAAGACGAGTAGGCGCTGTTTCCAACAGTCGAGATGCAGTTGTTGGAAGTGAAATTGAACCCTCTCTTCCTCTTGCAAGGGATGGTAGTCCTGGATCACTCCTTAAAACCTCTGGTGCTCAAAGAAATTCACCTATCACATCAACGGAGCTCAAAGGAACATCCAGCAGAAACACATCAAACATAAAGAATTTTGAGTCAACTCTCCGAGGTATTGAGAGCATGAATTTCAATGACGAGAAGGTACAGTATTAG 1425 0.4168 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKVLQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFSFCSRKLSLKTVLMLADQMINRVEYIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPSRAIGSGAGPSSGIPPAVVSATDRPTGGEEGRHAGWSSSDPARRRNSGPIANDVNLFRQKAPVPSDSTASKDAMLSSSNFFRPSGSTRRVGAVSNSRDAVVGSEIEPSLPLARDGSPGSLLKTSGAQRNSPITSTELKGTSSRNTSNIKNFESTLRGIESMNFNDEKVQY* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6668 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Psa5g6668 474 MobiDBLite consensus disorder prediction 424 452 - -
Psa5g6668 474 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6668 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Psa5g6668 474 MobiDBLite consensus disorder prediction 417 452 - -
Psa5g6668 474 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6668 474 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Psa5g6668 474 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 454 IPR030509 GO:0004672|GO:0005524
Psa5g6668 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Psa5g6668 474 PANTHER CASEIN KINASE-RELATED 1 454 - -
Psa5g6668 474 MobiDBLite consensus disorder prediction 325 375 - -
Psa5g6668 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6668 474 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6668 Psa-Chr5 556395834 556401703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6668 7 223 EF-hand Containing Proteins AT2G17890 26.667 6.94e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Psa5g6668 Pkinase 2.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6668 K02218 - gmx:100778165 810.061