Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6660 ATGGGAAATCAGAAGCAGAAGTGGACGCCTGAAGAAGAAGAAGCTTTGCATCAAGGCGTTCAAAAACACGGTACCGGAAAGTGGAAGAACATTCTCAGAGACAAAGAGTTCGCCGAAAAACTCTGTAGCCGTTCCAACATTGATCTCAAGGATAAATGGCGGAATTTAAGCGTTTTTCCTGGTCAAAACTCTAAAGATAAGTCTAGGACTCCCAAGGCGAAATCGTTAGTTATTGCTTCTGCTCCTGCTACTCCGGCTTCTGCCCCTGCTACTCCAGTTAATGCTACTCTGCAAAATGTTGCTCCTGCGTCTCAAATTCAGACTCCTACACACCAGCCTTCTCAAATTGAGGATGCTCCTCCACAGTACAATTCAATGATTTTTGAAGCTTTATCAACAATCAGAGATGCCAATGGGTCCGACTTGAGTGCTATTGTTAGCTTCATTGAGCAAAAGCACAACATTCCTCAAAACCAAAATTTCAGAAGGGCATTAGGTTCAAGGCTAAGAAGGCTTGTTACTCAAGGGAAGCTTGAAAAGGTACAAAATTGTTACAAAATTAAGGACACCCCAGTGGAGACAAAGCCGGCTGTTGACTCAAAACCACCTGCACCAAAAGAAATGAATTCGCCGGCGCCAGAGGCATCTAGTACTTCGGCATTTGATAATGCAATGAGGGAAGCTTCCGAAATTGTAGCATACAGAATTGCTGATGCGGAGAATAAGTCATTTTTGGCTGCTGAGGCAGTCAAGGAGACAGAAAGATATGCAAAGTTTGTTGAGGAAAATGATGCAATGTTAAAGTTTGCCGAAGAGCTTTTAGAAAAATGCAAGCTTGGTGGAAGTTTTCGCTTCGCATAA 861 0.4309 MGNQKQKWTPEEEEALHQGVQKHGTGKWKNILRDKEFAEKLCSRSNIDLKDKWRNLSVFPGQNSKDKSRTPKAKSLVIASAPATPASAPATPVNATLQNVAPASQIQTPTHQPSQIEDAPPQYNSMIFEALSTIRDANGSDLSAIVSFIEQKHNIPQNQNFRRALGSRLRRLVTQGKLEKVQNCYKIKDTPVETKPAVDSKPPAPKEMNSPAPEASSTSAFDNAMREASEIVAYRIADAENKSFLAAEAVKETERYAKFVEENDAMLKFAEELLEKCKLGGSFRFA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6660 286 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Psa5g6660 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Psa5g6660 286 Gene3D - 117 211 IPR036388 -
Psa5g6660 286 SMART h15plus2 109 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa5g6660 286 PANTHER SINGLE MYB HISTONE 4 1 283 IPR044597 GO:0003691
Psa5g6660 286 Pfam linker histone H1 and H5 family 121 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa5g6660 286 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Psa5g6660 286 SMART sant 4 59 IPR001005 -
Psa5g6660 286 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa5g6660 286 Gene3D - 8 81 - -
Psa5g6660 286 SUPERFAMILY "Winged helix" DNA-binding domain 120 198 IPR036390 -
Psa5g6660 286 MobiDBLite consensus disorder prediction 1 26 - -
Psa5g6660 286 MobiDBLite consensus disorder prediction 192 218 - -
Psa5g6660 286 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Psa5g6660 286 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 283 - -
Psa5g6660 286 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6660 Psa-Chr5 556138138 556143403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6660 1 286 Single Myb Histone (SMH) Gene Family AT1G72740 45.862 3.08e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g6660 Linker_histone 4.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6660 K09422 - cpap:110818338 280.026