Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6656 ATGGATAAGGACAAATCTTTGGGTCTTGGCGGTGGTTTACCACCTCCATCAGGACGTTTTTCAGGTTACTCGTCTACTGGAAGTGGTTTCAATGTGAAATCTGAACCCTCGTCGTCGTCGTTTCCGCCGCTTCCTCCTGCAACTAGTTCAGATTCTAGTGGTTTTAGTCATGATATTAGCAGAATGTCTGTTAATCCCCCGAGGAATAGAGGTCATAGGCGTGCTCATTCTGAGATTCTCACGTTGCCGGATGATATTAGCTTTGATAGTGACCTTGGTGTAGTTGGTGGTGCTGATGGACCCTCTTTCTCTGATGATACTGAGGAGGACTTGCTGTCCATGTACCTTGATATGGATAAATTCAATTCGTCGTCTGCAACATCGACATTTCAAATGGGTGAGCAGTTTAATGCTGGAGGGGGATCTGGTTTGGGACCGGTTTCGGCAGGGCAGGCTTCGGGAGCAGGTACTTCTTCCGGGGAAAATGCTGCCCTCGGTACTAATGAAAGGCCCAGAATTAGACACCAGCACAGCCAATCCATGGATGGGTCAACAACCATCAAACCTGAGATGTTAGTCTCGGGTTCAGAAGACTTGTCTGCAGCTGATTCCAAAAAAGCAATGTCAGCGGCAAAGCTTGCAGAACTTGCCTTGATCGACCCCAAGCGTGCAAAAAGGATATGGGCAAATAGGCAGTCTGCTGCGAGGTCCAAAGAGAGGAAGATGCGATACATTGCTGAGCTTGAAAGAAAAGTGCAGACACTGCAAACAGAAGCAACATCGTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAAACGGACTGAATTCTGAGAACAGTGAGCTGAAGCTGCGGTTGCAAACCATGGAACAACAAGTTCACTTGCAGGATGCTTTAAATGATGCGTTAAAAGAGGAAATTCAGCATTTGAAAGTACTGACTGGGCAAGCTATACCACCAAATGGAGGACCTATGATGAACTTTGCTTCATTTGGAGGGGGGCAGCAGTTCTATCCAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATCATGCCATGCACACTCTTTTAGCTGCACAACAGTTTCAACAGCTCCAAATTCATCCTCAGAAGCAGCAGCATCAATTTCAGCATCCATTTCAGCAACATCAACAACATATACAGCAGCAGCAGCAGCAGCAAATGCAGCAGCAAATGCAGCAGCAAATGCAGCAGGAACAACAGCAACAGCAACAGCAATCAGGCGACTTGAAAATGAGAGCAACTACATCCCCATCCCCCAAAGATACTGCTTCATCAGATGAAAATCCTTCGGCTTCCAAGGATTGTTGA 1368 0.4444 MDKDKSLGLGGGLPPPSGRFSGYSSTGSGFNVKSEPSSSSFPPLPPATSSDSSGFSHDISRMSVNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSTFQMGEQFNAGGGSGLGPVSAGQASGAGTSSGENAALGTNERPRIRHQHSQSMDGSTTIKPEMLVSGSEDLSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAIPPNGGPMMNFASFGGGQQFYPNNNNNNNNNNNNNNNNNSNNNNHAMHTLLAAQQFQQLQIHPQKQQHQFQHPFQQHQQHIQQQQQQQMQQQMQQQMQQEQQQQQQQSGDLKMRATTSPSPKDTASSDENPSASKDC* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6656 455 MobiDBLite consensus disorder prediction 167 187 - -
Psa5g6656 455 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 9 398 - -
Psa5g6656 455 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 9 398 - -
Psa5g6656 455 MobiDBLite consensus disorder prediction 1 74 - -
Psa5g6656 455 Pfam bZIP transcription factor 222 280 IPR004827 GO:0003700|GO:0006355
Psa5g6656 455 MobiDBLite consensus disorder prediction 378 449 - -
Psa5g6656 455 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 283 IPR004827 GO:0003700|GO:0006355
Psa5g6656 455 SUPERFAMILY Leucine zipper domain 222 273 IPR046347 GO:0003700|GO:0006355
Psa5g6656 455 Coils Coil 400 424 - -
Psa5g6656 455 Coils Coil 238 307 - -
Psa5g6656 455 CDD bZIP_plant_RF2 223 272 IPR044759 GO:0003700|GO:0006355
Psa5g6656 455 MobiDBLite consensus disorder prediction 378 455 - -
Psa5g6656 455 Gene3D - 221 294 - -
Psa5g6656 455 SMART brlzneu 218 282 IPR004827 GO:0003700|GO:0006355
Psa5g6656 455 MobiDBLite consensus disorder prediction 19 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6656 Psa-Chr5 556079324 556084630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6656 19 371 bZIP Transcription Factor Family AT1G06070 70.704 1.32e-164 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa5g6656 bZIP_1 5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6656 - - gmx:100786738 565.459