Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6650 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCAGCAACGATGATTTGTTGTGCAGATGAAGCTGCTTTGTGTGCTAAATGTGATATTGAAGTTCATGCTGCTAACAAGCTTGCAAGCAAACATCAGAGGCTTCTTCTGCAATCTCTCTCTAACAAGCTTCCTAGATGTGACATATGCCAAGATAAGGCAGCTTTCATATTCTGTGTAGAAGATAGAGCACTCTTCTGTCAGAATTGTGATGAAGCTATTCACCCTGCCGGCAGTCTTTCCGCCAACCACCAGCGCTTTCTTGCGACCGGTATCCGAGTGGCTGCGACTGCGAGTGCTAACTGCGCCCAAGACGACGAAAAACCTCACTTGGAACCACCAAATAAGAATCCTCAACAAGTTTCTCTTGAACCTCCTTCTCAACAAGTCCCTAACTTCTCTCCCTCTTGGGGTGTTGATGACTTATTGGAGTTAGCAGATTTTGATTCCCATGACAAAAAGGAATCCATGCAATTTGGAGAGATGGAATGGTTCACTGAGGAGGGACTGTTTGGTGAAGAATTTAATCAAGAAGCTATTTCTGCAGCTGAAGTTCCTCAGCTTCCAGTAACTCATCATGCTAGCAACAATTATTCATCATCACACAGAAACTCAAAGTCTAACAAAAAGCCTAGAATTGAACTCATACGCGATTATGATTATGATGATGAAGATGAGTACTTCACAGTGCCTGATCTTGGATGA 735 0.4286 MKIQCDVCEKAPATMICCADEAALCAKCDIEVHAANKLASKHQRLLLQSLSNKLPRCDICQDKAAFIFCVEDRALFCQNCDEAIHPAGSLSANHQRFLATGIRVAATASANCAQDDEKPHLEPPNKNPQQVSLEPPSQQVPNFSPSWGVDDLLELADFDSHDKKESMQFGEMEWFTEEGLFGEEFNQEAISAAEVPQLPVTHHASNNYSSSHRNSKSNKKPRIELIRDYDYDDEDEYFTVPDLG* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6650 244 CDD Bbox1_BBX-like 57 98 - -
Psa5g6650 244 MobiDBLite consensus disorder prediction 196 225 - -
Psa5g6650 244 Gene3D Classic Zinc Finger 1 91 - -
Psa5g6650 244 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Psa5g6650 244 MobiDBLite consensus disorder prediction 200 214 - -
Psa5g6650 244 SMART bboxneu5 52 99 IPR000315 GO:0008270
Psa5g6650 244 SMART bboxneu5 4 47 IPR000315 GO:0008270
Psa5g6650 244 CDD Bbox1_BBX-like 5 47 - -
Psa5g6650 244 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Psa5g6650 244 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 244 - -
Psa5g6650 244 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 244 - -
Psa5g6650 244 MobiDBLite consensus disorder prediction 114 138 - -
Psa5g6650 244 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6650 Psa-Chr5 555813839 555815702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6650 1 163 Orphan Transcription Factor Family AT1G06040 61.988 3.20e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Psa5g6650 zf-B_box 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6650 - - vun:114183169 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6650 5 555813839 555815702 Psa7g4803 7 416598234 416601139 PCT