Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6645 ATGCAGATCTTCGTCAAAACCCTGACGGGGAAAACCATCACCCTCGAGGTCAAGTCTTCCGACACCATCGATAATGTCAAAGCAAAGATCCAAGATAAGGAAGGAATCCCACCGGACCAACAACGACTCATCTTCGCCGACAAACAGCTAGAAGACGGCCGCACTCTTGCTGACTACAACATCCAGAAGGAATCCACACTCCACCTTGTTCTCCGTCTCCGTGGTGGAGCCGAGAAGCGTAAGAAGAAGACTTACACATAG 261 0.5019 MQIFVKTLTGKTITLEVKSSDTIDNVKAKIQDKEGIPPDQQRLIFADKQLEDGRTLADYNIQKESTLHLVLRLRGGAEKRKKKTYT* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6645 86 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Psa5g6645 86 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Psa5g6645 86 PRINTS Ubiquitin signature 11 31 IPR019956 -
Psa5g6645 86 PRINTS Ubiquitin signature 32 52 IPR019956 -
Psa5g6645 86 PRINTS Ubiquitin signature 53 74 IPR019956 -
Psa5g6645 86 CDD Ubl_ubiquitin 1 76 - -
Psa5g6645 86 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
Psa5g6645 86 PANTHER - 1 85 - -
Psa5g6645 86 SMART ubq_7 1 72 IPR000626 GO:0005515
Psa5g6645 86 PANTHER UBIQUITIN 1 85 - -
Psa5g6645 86 Gene3D - 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6645 Psa-Chr5 555726396 555726656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6645 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 96.512 6.16e-56 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6645 K02977 - jre:108979100 164.466