Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6638 AAAGGAGGTTAATGAGAAGCTAAAGAGTTTAAGTGCACCTATTGTTGGTTTGATTTTGCAAAGGAGTCGTATTGTTACCGACAATGATGGTCATTATGCTTCTAGTACTGCGTACTTGTATCCACTAACTGATGGTGATACAAGGCAGGGATTGAACAACTTGCAAGCAACAATGGATTCCAGTTTGACAGGAAGTGGCAAAACATTTACAATGCAACCATTACCACTCAGAGCTGCGAACGACCTTGTTAGACAGTTGCATCGACCAGTTTACCGAAATCAGAAATTTAAATTGTGGCTAGCTGGATTTTCAAGAGGCATACAAGAAATGCACAGAAAAGCATCGTTAGTTCTTGAAGATGCAGTTAGAAATATATACACTGTTGTTGCATTTTGTGCCAGAAATAAGGTAATGGAGCTCTATAGGTTGCAGTTAAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGGGATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCAATATGTATTAGGAATGGTTACATCAATCCATCCACTGCACTGAGGGAGTACATGGTTTTCTCCTTTGCCACATTTGCCCTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGACGGAAATCCCTCATATCAGTGTTTGACATTATAGACCGTGAGCCTAAAATTGATCCTGACGATAACAAAGCTTTGAAGCCACCCAATAGATTTTATGATCCAGTTGCGGGCCAAGTTTTACTGGATGGAAGGGATTTAAAGCTCTATAACTTGAGATGGTTGAGGAGCCACCCCGGTCTGATTCAGCAGGAACCTATTATCTTCTCAACAACCATAAGGGAAAACATTATATATGCAAGACACAATGCTAGTGAAGCTGAGATGAAAGAAGCGGCAAGAATAGCAAATGCTCATCATTTTATTAGCAGTTTGCCTCACGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTAACCCCAGGACAAAAACAGAGAATCGCAATTGCAAGAGTCCCAGCTGAGTCTCCTTCTCCTGTAAATGGGGGTGCAAATGGATTAGTTGGAAACCCTAACACTGCAAATGCAATTGCAACAGAGATGTATGAGGAAAGGTTAAAACTTCCCCTTCAAAGAATTTCCTTGGAAGATGCTGCGATGAAGCAAAGATTTGGAGACCAAATCTTGGACCCAAATCATGCCTCGATTTTGAAGTCATCCGCAGCTACTGGCCACTCACAGGGTTGGAGCAATTTTGTTCTGGTATACAGAATCCACAACCTTCCTGTTACAAGAAATTCACTGCAGTAA 1357 0.4112 KEVNEKLKSLSAPIVGLILQRSRIVTDNDGHYASSTAYLYPLTDGDTRQGLNNLQATMDSSLTGSGKTFTMQPLPLRAANDLVRQLHRPVYRNQKFKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCARNKVMELYRLQLKKIFKQSFLHGMGIGFAFGFSQFLLFACNALLLWYTAICIRNGYINPSTALREYMVFSFATFALVEPFGLAPYILKRRKSLISVFDIIDREPKIDPDDNKALKPPNRFYDPVAGQVLLDGRDLKLYNLRWLRSHPGLIQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVPAESPSPVNGGANGLVGNPNTANAIATEMYEERLKLPLQRISLEDAAMKQRFGDQILDPNHASILKSSAATGHSQGWSNFVLVYRIHNLPVTRNSLQ* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6638 451 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 196 440 IPR003439 GO:0005524
Psa5g6638 451 Pfam ABC transporter transmembrane region 99 201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g6638 451 Pfam ABC transporter 252 359 IPR003439 GO:0005524
Psa5g6638 451 SUPERFAMILY ABC transporter transmembrane region 96 241 IPR036640 GO:0005524|GO:0016021
Psa5g6638 451 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 96 251 - -
Psa5g6638 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 359 IPR027417 -
Psa5g6638 451 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 251 354 - -
Psa5g6638 451 Gene3D ABC transporter type 1, transmembrane domain 93 250 IPR036640 GO:0005524|GO:0016021
Psa5g6638 451 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 225 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g6638 451 Gene3D - 251 362 IPR027417 -
Psa5g6638 451 PANTHER ABC TRANSPORTER B FAMILY 251 354 - -
Psa5g6638 451 PANTHER ABC TRANSPORTER B FAMILY 96 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6638 Psa-Chr5 555244238 555246097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6638 100 360 Calmodulin-binding Proteins AT2G36910 34.603 1.98e-48 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6638 K05658 - twl:119980631 446.047